Repository 'stacks2_populations'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/stacks2_populations

Changeset 2:38942a7e3801 (2020-02-12)
Previous changeset 1:9a44832748c5 (2019-09-30) Next changeset 3:b242deb58952 (2020-07-16)
Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 4233f68e34f397685885d1828a85d5849a7b17bf"
modified:
stacks_populations.xml
b
diff -r 9a44832748c5 -r 38942a7e3801 stacks_populations.xml
--- a/stacks_populations.xml Mon Sep 30 14:17:47 2019 -0400
+++ b/stacks_populations.xml Wed Feb 12 18:22:03 2020 -0500
b
@@ -42,7 +42,7 @@
     -M '$popmap'
 #end if
 #if str($batch_size) != '':
-    -batch_size '$batch_size'
+    --batch-size '$batch_size'
 #end if
 
 ## Data filtering
@@ -309,6 +309,7 @@
                </collection>
             </param>
             <param name="popmap" ftype="tabular" value="denovo_map/popmap_cstacks.tsv" />
+            <param name="batch_size" value="9999" />
             <param name="add_log" value="yes" />
             <output ftype="txt" name="output_log" value="populations/populations.log" lines_diff="4"/>
             <output ftype="tabular" name="out_haplotypes" value="populations/populations.haplotypes.tsv"/>