Repository 'hmmer_nhmmer'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/hmmer_nhmmer

Changeset 2:ae4754e7c97a (2018-04-04)
Previous changeset 1:d15979968b74 (2016-11-14) Next changeset 3:c8e81e43bff1 (2018-04-07)
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit a1a31824fc24d5e652c263b998b7f2363cbd7610
modified:
nhmmer.xml
removed:
tool_dependencies.xml
b
diff -r d15979968b74 -r ae4754e7c97a nhmmer.xml
--- a/nhmmer.xml Mon Nov 14 15:11:53 2016 -0500
+++ b/nhmmer.xml Wed Apr 04 14:01:13 2018 -0400
b
@@ -42,13 +42,13 @@
     <data format="txt" name="output" label="NHMMER search of $seqfile.name in $hmmfile.name"/>
 
     <data format="txt" name="tblout" label="Table of per-sequence hits from HMM matches of $seqfile.name in $hmmfile.name">
-      <filter>'tblout' in str(oformat)</filter>
+      <filter>oformat and 'tblout' in oformat</filter>
     </data>
     <data format="txt" name="dfamtblout" label="Table of per-sequence/per-domain hits from HMM matches of $seqfile.name in $hmmfile.name">
-      <filter>'pfamtblout' in str(oformat)</filter>
+      <filter>oformat and 'pfamtblout' in oformat</filter>
     </data>
     <data format="txt" name="aliscoresout" label="Scores for positional matches of $seqfile.name in $hmmfile.name">
-      <filter>'aliscoresout' in str(oformat)</filter>
+      <filter>oformat and 'aliscoresout' in oformat</filter>
     </data>
   </outputs>
   <tests>
b
diff -r d15979968b74 -r ae4754e7c97a tool_dependencies.xml
--- a/tool_dependencies.xml Mon Nov 14 15:11:53 2016 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
b
@@ -1,6 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-  <package name="hmmer" version="3.1b2">
-    <repository changeset_revision="2a1881410dc9" name="package_hmmer_3_1b2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  </package>
-</tool_dependency>