Previous changeset 7:28c13c42de01 (2021-02-22) Next changeset 9:43815fa60f3a (2021-03-29) |
Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e0684fe95538cf97b1199ad1072d3da6d1619443" |
modified:
convert_VCF_info_fields.py variant.xml |
b |
diff -r 28c13c42de01 -r edf6d4003fad convert_VCF_info_fields.py --- a/convert_VCF_info_fields.py Mon Feb 22 19:59:00 2021 +0000 +++ b/convert_VCF_info_fields.py Tue Feb 23 20:13:39 2021 +0000 |
[ |
@@ -86,7 +86,7 @@ if dpsp == 0: info.append("AF=NaN") else: - af = dp4[2] + dp4[3] / dpsp + af = (dp4[2] + dp4[3]) / dpsp info.append("AF=%.6f" % (af)) if dpspf == 0: info.append("FAF=NaN") |
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diff -r 28c13c42de01 -r edf6d4003fad variant.xml --- a/variant.xml Mon Feb 22 19:59:00 2021 +0000 +++ b/variant.xml Tue Feb 23 20:13:39 2021 +0000 |
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@@ -1,5 +1,5 @@ <?xml version="1.0"?> -<tool id="medaka_variant" name="medaka variant tool" version="@TOOL_VERSION@+galaxy5" profile="@PROFILE@"> +<tool id="medaka_variant" name="medaka variant tool" version="@TOOL_VERSION@+galaxy6" profile="@PROFILE@"> <description>Probability decoding</description> <macros> <import>macros.xml</import> |