| Previous changeset 27:61ce21e36cb5 (2019-02-20) Next changeset 29:112eb40ba6cf (2019-04-05) |
|
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 3b3c0f1ea1756b0b250b5eb91661f33f11cc9c6d |
|
modified:
jbrowse.py macros.xml |
| b |
| diff -r 61ce21e36cb5 -r d0743cb18ed8 jbrowse.py --- a/jbrowse.py Wed Feb 20 11:50:21 2019 -0500 +++ b/jbrowse.py Fri Feb 22 03:20:59 2019 -0500 |
| [ |
| @@ -614,10 +614,7 @@ if not os.path.exists(dest): # Only index if not already done - cmd = "grep ^\"#\" '%s' > '%s'" % (data, dest) - self.subprocess_popen(cmd) - - cmd = "grep -v ^\"#\" '%s' | grep -v \"^$\" | grep \"\t\" | sort -k1,1 -k4,4n >> '%s'" % (data, dest) + cmd = "gff3sort.pl --precise '%s' | grep -v \"^$\" > '%s'" % (data, dest) self.subprocess_popen(cmd) cmd = ['bgzip', '-f', dest] |
| b |
| diff -r 61ce21e36cb5 -r d0743cb18ed8 macros.xml --- a/macros.xml Wed Feb 20 11:50:21 2019 -0500 +++ b/macros.xml Fri Feb 22 03:20:59 2019 -0500 |
| [ |
| @@ -14,7 +14,7 @@ </requirements> </xml> <token name="@DATA_DIR@">\$GALAXY_JBROWSE_SHARED_DIR</token> - <token name="@WRAPPER_VERSION@">galaxy1</token> + <token name="@WRAPPER_VERSION@">galaxy2</token> <token name="@ATTRIBUTION@"><![CDATA[ **Attribution** |