| Previous changeset 25:d88bbb287923 (2021-04-27) Next changeset 27:1c3a2f66373f (2021-06-09) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2dd9bdc695433c217bbb7e11c1c0138245beb801" |
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modified:
hyphy_bgm.xml |
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| diff -r d88bbb287923 -r d1c977aee228 hyphy_bgm.xml --- a/hyphy_bgm.xml Tue Apr 27 18:01:09 2021 +0000 +++ b/hyphy_bgm.xml Tue May 18 20:09:03 2021 +0000 |
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| @@ -1,5 +1,5 @@ <?xml version="1.0"?> -<tool id="hyphy_bgm" name="HyPhy-BGM" version="@VERSION@+galaxy1" profile="19.09"> +<tool id="hyphy_bgm" name="HyPhy-BGM" version="@VERSION@+galaxy2" profile="19.09"> <description>- Detecting coevolving sites via Bayesian graphical models</description> <macros> <import>macros.xml</import> @@ -7,8 +7,9 @@ <expand macro="requirements"/> <command detect_errors="exit_code"><![CDATA[ @SYMLINK_FILES@ + ln -s '$bgm_output' ${input_file}.BGM.json && hyphy bgm - --alignment ./$input_file + --alignment $input_file @INPUT_TREE@ --run_type $datatype.value #if $datatype.value == "codon": @@ -49,7 +50,7 @@ <param argument="--min-subs" name="min_subs" type="integer" value="1" min="1" max="100000" label="Minimum number of ubstitutions per site to be included in the analysis" /> </inputs> <outputs> - <data name="bgm_output" format="hyphy_results.json" from_work_dir="bgm_input.fa.BGM.json"/> + <data name="bgm_output" format="hyphy_results.json" /> </outputs> <tests> <test> |