| Previous changeset 11:b8c00ce5dfa0 (2019-11-21) Next changeset 13:b7829778729f (2021-09-20) |
|
Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/spades commit a66345b894a128f7cb44876cc9a51f48c5213d95" |
|
modified:
spades.xml |
| b |
| diff -r b8c00ce5dfa0 -r 1796ea206dec spades.xml --- a/spades.xml Thu Nov 21 11:13:06 2019 -0500 +++ b/spades.xml Thu Sep 16 15:26:12 2021 +0000 |
| [ |
| @@ -1,5 +1,8 @@ <tool id="spades" name="SPAdes" version="@TOOL_VERSION@+galaxy1"> <description>genome assembler for regular and single-cell projects</description> + <xrefs> + <xref type="bio.tools">spades</xref> + </xrefs> <macros> <import>macros.xml</import> </macros> @@ -21,7 +24,7 @@ <![CDATA[ ## A real command looks like: spades.py -k 21,33,55,77,99,127 --careful -1 Y.fastq.gz -2 X.fastq.gz -t 24 -o output - if [[ -n \$GALAXY_MEMORY_MB ]]; then + if [ -n "\$GALAXY_MEMORY_MB" ]; then GALAXY_MEMORY_GB=\$(( GALAXY_MEMORY_MB / 1024 )); fi && |