| Previous changeset 2:d0a2e0a9c853 (2025-02-27) Next changeset 4:6d5c8a6ceea0 (2025-09-09) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/staramr commit e62bb361f68ef29164b43337da3b3f4a09a98836 |
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modified:
staramr_search.xml |
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| diff -r d0a2e0a9c853 -r 59d308975e63 staramr_search.xml --- a/staramr_search.xml Thu Feb 27 16:29:20 2025 +0000 +++ b/staramr_search.xml Thu Mar 20 12:31:44 2025 +0000 |
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| @@ -2,7 +2,7 @@ <description>Scans genome assemblies against the ResFinder, PlasmidFinder, and PointFinder databases searching for AMR genes</description> <macros> <token name="@TOOL_VERSION@">0.11.0</token> - <token name="@VERSION_SUFFIX@">1</token> + <token name="@VERSION_SUFFIX@">2</token> <token name="@PROFILE@">22.05</token> <xml name="element_assert" token_name="" token_text=""> <element name="@NAME@"> @@ -13,7 +13,7 @@ </element> </xml> </macros> - <xrefs> + <xrefs> <xref type="bio.tools">staramr</xref> </xrefs> <requirements> @@ -306,16 +306,16 @@ </param> </section> <section name="output_files" title="Selection of the output files" expanded="true" > - <param name="output_selection" type="select" display="checkboxes" multiple="true" label="Output files selection"> - <option value="mlst_table" selected="true">MLST report</option> - <option value="summary_table" selected="true">AMR genes/mutations summary</option> - <option value="detailed_summary_table" selected="true">AMR genes/mutations/plasmids detailed summary</option> - <option value="resfinder_table" selected="true">AMR gene report from ResFinder</option> - <option value="plasmidfinder_table" selected="true">AMR gene report from PlasmidFinder</option> - <option value="pointfinder_table" selected="true">AMR gene report from PointFinder</option> - <option value="settings_output" selected="false">Settings file</option> - <option value="excel_output" selected="false">Excel spreadsheet</option> - </param> + <param name="output_selection" type="select" display="checkboxes" multiple="true" label="Output files selection"> + <option value="mlst_table" selected="true">MLST report</option> + <option value="summary_table" selected="true">AMR genes/mutations summary</option> + <option value="detailed_summary_table" selected="true">AMR genes/mutations/plasmids detailed summary</option> + <option value="resfinder_table" selected="true">AMR gene report from ResFinder</option> + <option value="plasmidfinder_table" selected="true">AMR gene report from PlasmidFinder</option> + <option value="pointfinder_table" selected="true">AMR gene report from PointFinder</option> + <option value="settings_output" selected="false">Settings file</option> + <option value="excel_output" selected="false">Excel spreadsheet</option> + </param> </section> </inputs> <outputs> @@ -335,7 +335,6 @@ <filter>output_files['output_selection'] and "plasmidfinder_table" in output_files['output_selection']</filter> </data> <data format="tabular" name="pointfinder" label="${tool.name} on ${on_string}: AMR point mutation report from PointFinder"> - <filter>pointfinder_organism != "disabled"</filter> <filter>output_files['output_selection'] and "pointfinder_table" in output_files['output_selection']</filter> </data> <data format="txt" name="settings" label="${tool.name} on ${on_string}: Settings file" > |