Repository 'gmx_setup'
hg clone https://toolshed.g2.bx.psu.edu/repos/chemteam/gmx_setup

Changeset 15:8ad46f918541 (2021-10-27)
Previous changeset 14:1d4dd4f908d4 (2021-09-29) Next changeset 16:dfa3e24fd85d (2021-11-30)
Commit message:
"planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs commit bf18581ac3de6b65bdc0a988e6f844cea6e77975"
modified:
macros.xml
b
diff -r 1d4dd4f908d4 -r 8ad46f918541 macros.xml
--- a/macros.xml Wed Sep 29 07:42:14 2021 +0000
+++ b/macros.xml Wed Oct 27 08:00:18 2021 +0000
b
@@ -5,6 +5,9 @@
             <requirement type="package" version="@TOOL_VERSION@">gromacs</requirement>
         </requirements>
     </xml>
+
+    <token name="@MAXWARN_CMD@">-maxwarn '$mxw'</token>
+
     <xml name="citations">
         <citations>
             <citation type="doi">10.1016/j.softx.2015.06.001</citation>
@@ -61,6 +64,10 @@
         <param name="capture_log" type="boolean" value="false" label="Generate detailed log" help="Generate detailed log information that can be summarized with ParseLog."/>
     </xml>
 
+    <xml name="maxwarn">
+        <param name="mxw" value="0" min="0" argument="-maxwarn" type="integer" label="Maximum warnings to allow." help="Do not use this unless you know what you are doing. This option allows you to override non-fatal warnings, that would otherwise cause the simulation to fail."/>
+    </xml>
+
     <xml name="log_outputs">
         <data name="report" format="txt" from_work_dir="verbose.txt" label="GROMACS log file on ${on_string}">
             <filter>capture_log</filter>