Repository 'sklearn_numeric_clustering'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_numeric_clustering

Changeset 7:09cd12b741fb (2018-04-28)
Previous changeset 6:8fc64b67bb7f (2018-04-12) Next changeset 8:85d31935d4a2 (2018-05-22)
Commit message:
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee
modified:
main_macros.xml
added:
test-data/mv_result01.tabular
test-data/mv_result02.tabular
test-data/mv_result03.tabular
test-data/mv_result04.tabular
test-data/mv_result05.tabular
test-data/mv_result06.tabular
test-data/regression_metrics_result01
test-data/regression_metrics_result02
test-data/regression_metrics_result03
test-data/regression_metrics_result04
test-data/regression_metrics_result05
test-data/regression_metrics_result06
test-data/regression_test_y.tabular
b
diff -r 8fc64b67bb7f -r 09cd12b741fb main_macros.xml
--- a/main_macros.xml Thu Apr 12 08:22:58 2018 -0400
+++ b/main_macros.xml Sat Apr 28 18:08:17 2018 -0400
b
@@ -423,8 +423,10 @@
 
   <xml name="clf_inputs" token_label1="Dataset containing true labels (tabular):" token_label2="Dataset containing predicted values (tabular):" token_multiple1="False" token_multiple="False">
     <param name="infile1" type="data" format="tabular" label="@LABEL1@"/>
+    <param name="header1" type="boolean" optional="True" truevalue="booltrue" falsevalue="boolfalse" checked="False" label="Does the dataset contain header:" />
     <param name="col1" multiple="@MULTIPLE1@" type="data_column" data_ref="infile1" label="Select the target column:"/>
     <param name="infile2" type="data" format="tabular" label="@LABEL2@"/>
+    <param name="header2" type="boolean" optional="True" truevalue="booltrue" falsevalue="boolfalse" checked="False" label="Does the dataset contain header:" />
     <param name="col2" multiple="@MULTIPLE@" type="data_column" data_ref="infile2" label="Select target column(s):"/>
   </xml>
 
@@ -835,6 +837,21 @@
     </conditional>
   </xml>
 
+  <xml name="model_validation_common_options">
+    <param argument="cv" type="integer" value="" optional="true" label="cv" help="The number of folds in a (Stratified)KFold" />
+    <expand macro="n_jobs"/>
+    <expand macro="verbose"/>
+    <yield/>
+  </xml>
+
+  <xml name="scoring">
+    <param argument="scoring" type="text" value="" optional="true" label="scoring" help="A metric used to evaluate the estimator"/>
+  </xml>
+
+  <xml name="pre_dispatch">
+    <param argument="pre_dispatch" type="text" value="all" optional="true" label="pre_dispatch" help="Number of predispatched jobs for parallel execution"/>
+  </xml>
+
   <!-- Outputs -->
 
   <xml name="output">
b
diff -r 8fc64b67bb7f -r 09cd12b741fb test-data/mv_result01.tabular
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/mv_result01.tabular Sat Apr 28 18:08:17 2018 -0400
b
@@ -0,0 +1,3 @@
+0.9452947345848994
+0.9926363525448115
+-0.4384003222944141
b
diff -r 8fc64b67bb7f -r 09cd12b741fb test-data/mv_result02.tabular
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/mv_result02.tabular Sat Apr 28 18:08:17 2018 -0400
b
@@ -0,0 +1,10 @@
+1.6957921248350636
+-0.9248588846061156
+-0.48640795813792376
+0.647707440306449
+0.32740690920811427
+-0.8229559569886034
+1.2150108977866847
+0.14723254190255275
+0.6053186541119763
+0.3972102859168325
b
diff -r 8fc64b67bb7f -r 09cd12b741fb test-data/mv_result03.tabular
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/mv_result03.tabular Sat Apr 28 18:08:17 2018 -0400
b
@@ -0,0 +1,3 @@
+0.9452947345848994
+0.9926363525448115
+-0.4384003222944141
b
diff -r 8fc64b67bb7f -r 09cd12b741fb test-data/mv_result04.tabular
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/mv_result04.tabular Sat Apr 28 18:08:17 2018 -0400
b
@@ -0,0 +1,5 @@
+17
+56
+95
+134
+174
b
diff -r 8fc64b67bb7f -r 09cd12b741fb test-data/mv_result05.tabular
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/mv_result05.tabular Sat Apr 28 18:08:17 2018 -0400
b
@@ -0,0 +1,1 @@
+0.4998435882784322
b
diff -r 8fc64b67bb7f -r 09cd12b741fb test-data/mv_result06.tabular
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/mv_result06.tabular Sat Apr 28 18:08:17 2018 -0400
b
@@ -0,0 +1,5 @@
+0.07547169811320754 0.10344827586206896 0.10294117647058823
+0.07547169811320754 0.10344827586206896 0.10294117647058823
+0.07547169811320754 0.10344827586206896 0.10294117647058823
+0.07547169811320754 0.10344827586206896 0.10294117647058823
+0.07547169811320754 0.10344827586206896 0.10294117647058823
b
diff -r 8fc64b67bb7f -r 09cd12b741fb test-data/regression_metrics_result01
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/regression_metrics_result01 Sat Apr 28 18:08:17 2018 -0400
b
@@ -0,0 +1,2 @@
+explained_variance_score : 
+0.8260
b
diff -r 8fc64b67bb7f -r 09cd12b741fb test-data/regression_metrics_result02
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/regression_metrics_result02 Sat Apr 28 18:08:17 2018 -0400
b
@@ -0,0 +1,2 @@
+mean_absolute_error : 
+3.8706
b
diff -r 8fc64b67bb7f -r 09cd12b741fb test-data/regression_metrics_result03
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/regression_metrics_result03 Sat Apr 28 18:08:17 2018 -0400
b
@@ -0,0 +1,2 @@
+mean_squared_error : 
+26.0153
b
diff -r 8fc64b67bb7f -r 09cd12b741fb test-data/regression_metrics_result04
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/regression_metrics_result04 Sat Apr 28 18:08:17 2018 -0400
b
@@ -0,0 +1,2 @@
+mean_squared_log_error : 
+0.0061
b
diff -r 8fc64b67bb7f -r 09cd12b741fb test-data/regression_metrics_result05
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/regression_metrics_result05 Sat Apr 28 18:08:17 2018 -0400
b
@@ -0,0 +1,2 @@
+median_absolute_error : 
+3.0090
b
diff -r 8fc64b67bb7f -r 09cd12b741fb test-data/regression_metrics_result06
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/regression_metrics_result06 Sat Apr 28 18:08:17 2018 -0400
b
@@ -0,0 +1,2 @@
+r2_score : 
+0.8129
b
diff -r 8fc64b67bb7f -r 09cd12b741fb test-data/regression_test_y.tabular
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/regression_test_y.tabular Sat Apr 28 18:08:17 2018 -0400
b
@@ -0,0 +1,88 @@
+actual prediction
+66 69.857
+61 61.319
+52 51.891
+66 61.321
+70 66.463
+82 70.162
+85 78.848
+84 75.786
+65 62.121
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+44 38.458
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+79 76.113
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+65 66.769
+52 46.448
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+64 73.833
+61 64.313
+48 55.188
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+57 61.695
+58 53.636
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+68 68.929
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+77 70.385
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+73 76.172
+51 42.396
+59 61.098
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+58 52.745
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+58 53.324
+42 42.471
+49 46.507
+40 42.106
+65 64.17
+64 65.703
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+65 61.339
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+57 59.945
+53 54.651
+60 59.664
+67 65.474
+49 50.061
+53 60.849
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+55 60.062
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+69 69.796
+78 76.83
+36 41.32
+74 76.868
+57 56.783
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+50 50.468
+56 54.426
+67 63.991
+48 43.711
+80 74.354
+48 47.306
+49 52.326
+57 53.526
+77 68.21
+81 73.607
+67 72.658
+66 63.243
+57 57.126
+45 46.04