| Previous changeset 15:7ee4417b24cc (2020-11-13) Next changeset 17:da13741428bf (2021-04-12) |
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Commit message:
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit b03a24b2e459a00c79221b160d9187902a4098d0-dirty" |
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modified:
scanpy-run-pca.xml scanpy_macros2.xml |
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| diff -r 7ee4417b24cc -r 988edd5fa902 scanpy-run-pca.xml --- a/scanpy-run-pca.xml Fri Nov 13 14:58:37 2020 +0000 +++ b/scanpy-run-pca.xml Wed Nov 25 16:22:51 2020 +0000 |
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| @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="utf-8"?> -<tool id="scanpy_run_pca" name="Scanpy RunPCA" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@"> +<tool id="scanpy_run_pca" name="Scanpy RunPCA" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@"> <description>for dimensionality reduction</description> <macros> <import>scanpy_macros2.xml</import> @@ -8,7 +8,9 @@ <command detect_errors="exit_code"><![CDATA[ ln -s '${input_obj_file}' input.h5 && PYTHONIOENCODING=utf-8 scanpy-run-pca +#if $n_pcs --n-comps '${n_pcs}' +#end if #if $run_mode.chunked --chunked --chunk-size '${run_mode.chunk_size}' @@ -31,7 +33,7 @@ <inputs> <expand macro="input_object_params"/> <expand macro="output_object_params"/> - <param name="n_pcs" argument="--n-comps" type="integer" min="2" value="50" label="Number of PCs to produce"/> + <param name="n_pcs" argument="--n-comps" type="integer" optional="true" min="2" value="" label="Number of PCs to produce"/> <conditional name="run_mode"> <param name="chunked" argument="--chunked" type="boolean" checked="false" label="Perform incremental PCA by chunks"/> <when value="true"> |
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| diff -r 7ee4417b24cc -r 988edd5fa902 scanpy_macros2.xml --- a/scanpy_macros2.xml Fri Nov 13 14:58:37 2020 +0000 +++ b/scanpy_macros2.xml Wed Nov 25 16:22:51 2020 +0000 |
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| @@ -49,7 +49,7 @@ <xml name="requirements"> <requirements> - <requirement type="package" version="0.3.1">scanpy-scripts</requirement> + <requirement type="package" version="0.3.2">scanpy-scripts</requirement> <yield/> </requirements> </xml> |