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Changeset 5:b2edf498e8fb (2019-05-07)

Previous changeset 4:aeb1f7daa7c2 (2017-11-09)

Commit message:
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/osra commit ed9b6859de648aa5f7cde483732f5df20aaff90e

modified:
osra.xml
test-data/CID_2244.png

added:
test-data/CID_2244.jpg

diff -r aeb1f7daa7c2 -r b2edf498e8fb osra.xml
--- a/osra.xml Thu Nov 09 03:41:42 2017 -0500
+++ b/osra.xml Tue May 07 13:39:51 2019 -0400

[

@@ -1,7 +1,8 @@
<tool id="ctb_osra" name="Molecule recognition" version="2.1.0">
-    <description>in Images or PDF documents (OSRA)</description>
+    <description>in PDF documents (OSRA)</description>
     <requirements>
         <requirement type="package" version="2.1.0">osra</requirement>
+        <requirement type="package" version="0.52">poppler</requirement>
     </requirements>
     <command detect_errors="aggressive">
<![CDATA[
@@ -44,6 +45,11 @@
             <param name="oformat" value="sdf"/>
             <output name="outfile" ftype="sdf" file="osra_on_CID2244.sdf"/>
         </test>
+        
         <!--test>
             PNGs producing a core-dump in osra
             <param name="infile" value="2008001635_153_chem.png"/>
@@ -58,7 +64,7 @@

**What this tool does**

-OSRA_ (Optical Structure Recognition Application) is a utility designed to convert graphical representations of chemical structures into SMILES or SDF. It generates the SMILES or SDF representation of any molecular structure image within a document which is parseable by GraphicMagick.
+OSRA_ (Optical Structure Recognition Application) is a utility designed to convert graphical representations of chemical structures, contained within a PDF file, into a SMILES or SDF representation.

.. _OSRA: http://cactus.nci.nih.gov/osra/

diff -r aeb1f7daa7c2 -r b2edf498e8fb test-data/CID_2244.jpg

Binary file test-data/CID_2244.jpg has changed

diff -r aeb1f7daa7c2 -r b2edf498e8fb test-data/CID_2244.png

Binary file test-data/CID_2244.png has changed