| Previous changeset 14:3b5b54ed6392 (2021-03-16) Next changeset 16:77919cc3618e (2023-10-18) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit fa140a9f660eab2459e21b0b637b129d7de24c02 |
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modified:
hicPCA.xml macros.xml |
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| diff -r 3b5b54ed6392 -r 41dbf4d162a2 hicPCA.xml --- a/hicPCA.xml Tue Mar 16 15:05:22 2021 +0000 +++ b/hicPCA.xml Tue Jan 10 18:56:55 2023 +0000 |
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| @@ -95,13 +95,13 @@ </change_format> </data> - <data name="pearson_outfile" from_work_dir="pearson" format="cool"> + <data name="pearson_outfile" from_work_dir="pearson" format="cool" label="${tool.name} on ${on_string}: Pearson matrix"> <filter>pearsonMatrix</filter> <change_format> - <when input_dataset="matrix_h5_cooler" attribute="ext" value="h5" format="h5" /> + <when input_dataset="matrix_h5_cooler" attribute="ext" value="h5" format="h5"/> </change_format> </data> - <data name="obsexp_outfile" from_work_dir="obsexp" format="cool"> + <data name="obsexp_outfile" from_work_dir="obsexp" format="cool" label="${tool.name} on ${on_string}: observed / expected matrix"> <filter>obsexpMatrix</filter> <change_format> <when input_dataset="matrix_h5_cooler" attribute="ext" value="h5" format="h5" /> @@ -228,7 +228,7 @@ | For more information about HiCExplorer please consider our documentation on readthedocs.io_ .. _readthedocs.io: http://hicexplorer.readthedocs.io/en/latest/index.html -.. _`Lieberman-Aiden et al. (2009)`: https://doi.org/10.1126%2Fscience.1181369 +.. _`Lieberman-Aiden et al. (2009)`: https://doi.org/10.1126/science.1181369 ]]> </help> <expand macro="citations" /> </tool> |
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| diff -r 3b5b54ed6392 -r 41dbf4d162a2 macros.xml --- a/macros.xml Tue Mar 16 15:05:22 2021 +0000 +++ b/macros.xml Tue Jan 10 18:56:55 2023 +0000 |
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| @@ -1,7 +1,7 @@ <macros> <token name="@THREADS@">\${GALAXY_SLOTS:-4}</token> <token name="@TOOL_VERSION@">3.6</token> - <token name="@VERSION_SUFFIX@">0</token> + <token name="@VERSION_SUFFIX@">1</token> <token name="@USE_RANGE@"> #if $use_range.select_use_range == "yes_use_range": --range $use_range.range_min:$use_range.range_max @@ -333,7 +333,7 @@ <param name="scaleFactor2" type="float" value="1" label="Scale factor for input" help="(--scaleFactors)" /> </xml> <xml name="xMax"> - <param argument="--xMax" name="xMax" type="integer" optional="true" value="" label="Max value for the x-axis in counts per bin" /> + <param argument="--xMax" type="integer" optional="true" value="" label="Max value for the x-axis in counts per bin" /> </xml> <xml name="filterThreshold"> <param argument="--filterThreshold" name="filterThreshold_low" type="float" value="-1.5" label="Remove bins of low coverage" help="e.g. -1.5; Both Thresholds needs to be set to take effect." /> |