Repository 'hicexplorer_hicpca'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicpca

Changeset 5:dbf4afa03b00 (2018-04-27)
Previous changeset 4:38a612a120a8 (2018-04-27) Next changeset 6:ebb9b94138c1 (2018-06-09)
Commit message:
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit dddc0b9035b8edadfd45d74b01aeca245c2725d7
modified:
hicPCA.xml
added:
static/images/hicCompareMatrices_QC_log2_m50_matrix_plot.png
static/images/hicCompareMatrices_m1bp_over_gst_log2_m50_matrix_plot.png
static/images/hicPlotDistVsCounts.png
removed:
static/images/hicCompareMatrices_QC_log2_m50_matrix_plot (1).png
static/images/hicCompareMatrices_m1bp_over_gst_log2_m50_matrix_plot (1).png
static/images/hicPlotDistvsCounts.png
test-data/find_TADs/multiBonferroni_boundaries.bed
test-data/find_TADs/multiBonferroni_boundaries.gff
test-data/find_TADs/multiBonferroni_domains.bed
test-data/find_TADs/multiBonferroni_score.bedgraph
test-data/find_TADs/multiBonferroni_tad_score.bm
test-data/find_TADs/multiBonferroni_zscore_matrix.h5
test-data/find_TADs/multiFDR_zscore_matrix.h5
test-data/find_TADs/multiNone_boundaries.bed
test-data/find_TADs/multiNone_boundaries.gff
test-data/find_TADs/multiNone_domains.bed
test-data/find_TADs/multiNone_score.bedgraph
test-data/find_TADs/multiNone_tad_score.bm
test-data/find_TADs/multiNone_zscore_matrix.h5
test-data/hicBuildMatrix_result1.bam
test-data/hicFindTADs_find_boundaries.bed
test-data/hicFindTADs_find_boundaries.gff
test-data/hicFindTADs_find_domains.bed
test-data/merged_matrix.npz.h5
test-data/multiFDR_boundaries.bed
test-data/multiFDR_boundaries.gff
test-data/multiFDR_domains.bed
test-data/multiFDR_score.bedgraph
test-data/multiFDR_tad_score.bm
test-data/small_test_matrix_result.bam
b
diff -r 38a612a120a8 -r dbf4afa03b00 hicPCA.xml
--- a/hicPCA.xml Fri Apr 27 03:31:20 2018 -0400
+++ b/hicPCA.xml Fri Apr 27 08:39:37 2018 -0400
b
@@ -83,7 +83,7 @@
 For example, below you can find a ``hicPlotMatrix`` of the Pearson correlation matrix derived from a contact matrix for chromosome 6 in mouse computed with ``hicTransform`` (which is part of A/B compartments computation). The optional data track at the bottom shows the first eigenvector for A/B compartment obtained using **hicPCA**.
 
 .. image:: $PATH_TO_IMAGES/hicPCA.png
-   :width: 60 %
+   :scale: 35 %
 
 _________________
 
b
diff -r 38a612a120a8 -r dbf4afa03b00 static/images/hicCompareMatrices_QC_log2_m50_matrix_plot (1).png
b
Binary file static/images/hicCompareMatrices_QC_log2_m50_matrix_plot (1).png has changed
b
diff -r 38a612a120a8 -r dbf4afa03b00 static/images/hicCompareMatrices_QC_log2_m50_matrix_plot.png
b
Binary file static/images/hicCompareMatrices_QC_log2_m50_matrix_plot.png has changed
b
diff -r 38a612a120a8 -r dbf4afa03b00 static/images/hicCompareMatrices_m1bp_over_gst_log2_m50_matrix_plot (1).png
b
Binary file static/images/hicCompareMatrices_m1bp_over_gst_log2_m50_matrix_plot (1).png has changed
b
diff -r 38a612a120a8 -r dbf4afa03b00 static/images/hicCompareMatrices_m1bp_over_gst_log2_m50_matrix_plot.png
b
Binary file static/images/hicCompareMatrices_m1bp_over_gst_log2_m50_matrix_plot.png has changed
b
diff -r 38a612a120a8 -r dbf4afa03b00 static/images/hicPlotDistVsCounts.png
b
Binary file static/images/hicPlotDistVsCounts.png has changed
b
diff -r 38a612a120a8 -r dbf4afa03b00 static/images/hicPlotDistvsCounts.png
b
Binary file static/images/hicPlotDistvsCounts.png has changed
b
diff -r 38a612a120a8 -r dbf4afa03b00 test-data/find_TADs/multiBonferroni_boundaries.bed
--- a/test-data/find_TADs/multiBonferroni_boundaries.bed Fri Apr 27 03:31:20 2018 -0400
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
b
@@ -1,2 +0,0 @@
-chr2L 22922500 22927500 B09504 -0.06825625 .
-chrX 87500 92500 B09542 -0.0720205 .
b
diff -r 38a612a120a8 -r dbf4afa03b00 test-data/find_TADs/multiBonferroni_boundaries.gff
--- a/test-data/find_TADs/multiBonferroni_boundaries.gff Fri Apr 27 03:31:20 2018 -0400
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
b
@@ -1,2 +0,0 @@
-chr2L HiCExplorer boundary 22922500 22927500 -0.06825625 . . ID=B09504;delta=0.0219547105263;pvalue=0.0547512191318;tad_sep=-0.06825625
-chrX HiCExplorer boundary 87500 92500 -0.0720205 . . ID=B09542;delta=0.0197999736842;pvalue=0.0890201733631;tad_sep=-0.0720205
b
diff -r 38a612a120a8 -r dbf4afa03b00 test-data/find_TADs/multiBonferroni_score.bedgraph
--- a/test-data/find_TADs/multiBonferroni_score.bedgraph Fri Apr 27 03:31:20 2018 -0400
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
b
b'@@ -1,23814 +0,0 @@\n-chr2RHet\t2500\t3286880\t0.0\n-chr3RHet\t2500\t2516253\t0.0\n-chr2LHet\t2500\t366936\t0.0\n-chr4\t2500\t1350928\t0.0\n-chrYHet\t2500\t346019\t0.0\n-chr3L\t2500\t7500\t-0.15973725\n-chr3L\t7500\t12500\t-0.1550825\n-chr3L\t12500\t17500\t-0.1511685\n-chr3L\t17500\t22500\t-0.14787325\n-chr3L\t22500\t27500\t-0.14477275\n-chr3L\t27500\t32500\t-0.141869\n-chr3L\t32500\t37500\t-0.13920825\n-chr3L\t37500\t42500\t-0.13669525\n-chr3L\t42500\t47500\t-0.13435775\n-chr3L\t47500\t52500\t-0.13219825\n-chr3L\t52500\t57500\t-0.13013875\n-chr3L\t57500\t62500\t-0.09402375\n-chr3L\t62500\t67500\t-0.076427\n-chr3L\t67500\t72500\t-0.04183125\n-chr3L\t72500\t77500\t0.0197075\n-chr3L\t77500\t82500\t0.07052875\n-chr3L\t82500\t87500\t0.07283975\n-chr3L\t87500\t92500\t0.07045525\n-chr3L\t92500\t97500\t0.0683615\n-chr3L\t97500\t102500\t0.06999375\n-chr3L\t102500\t107500\t0.0683285\n-chr3L\t107500\t112500\t0.066853\n-chr3L\t112500\t117500\t0.06554\n-chr3L\t117500\t122500\t0.06436125\n-chr3L\t122500\t127500\t0.00960325\n-chr3L\t127500\t132500\t0.012285\n-chr3L\t132500\t137500\t-0.00142775\n-chr3L\t137500\t142500\t-0.060362\n-chr3L\t142500\t147500\t-0.05156225\n-chr3L\t147500\t152500\t-0.0552185\n-chr3L\t152500\t157500\t-0.06660375\n-chr3L\t157500\t162500\t-0.070088\n-chr3L\t162500\t167500\t-0.10316675\n-chr3L\t167500\t172500\t-0.10316675\n-chr3L\t172500\t177500\t-0.10316675\n-chr3L\t177500\t182500\t-0.089227\n-chr3L\t182500\t187500\t-0.0778915\n-chr3L\t187500\t192500\t-0.0547475\n-chr3L\t192500\t197500\t-0.06240725\n-chr3L\t197500\t202500\t-0.040267\n-chr3L\t202500\t207500\t-0.018089\n-chr3L\t207500\t212500\t-0.018089\n-chr3L\t212500\t217500\t-0.018089\n-chr3L\t217500\t222500\t0.0190635\n-chr3L\t222500\t227500\t0.01122225\n-chr3L\t227500\t232500\t-0.00338425\n-chr3L\t232500\t237500\t0.018671\n-chr3L\t237500\t242500\t0.015759\n-chr3L\t242500\t247500\t0.015759\n-chr3L\t247500\t252500\t-0.00807575\n-chr3L\t252500\t257500\t-0.01047525\n-chr3L\t257500\t262500\t-0.026655\n-chr3L\t262500\t267500\t-0.01461\n-chr3L\t267500\t272500\t-0.01739225\n-chr3L\t272500\t277500\t0.006616\n-chr3L\t277500\t282500\t0.02626725\n-chr3L\t282500\t287500\t0.02671675\n-chr3L\t287500\t292500\t0.04431375\n-chr3L\t292500\t297500\t0.075128\n-chr3L\t297500\t302500\t0.0517535\n-chr3L\t302500\t307500\t0.03498275\n-chr3L\t307500\t312500\t0.04280875\n-chr3L\t312500\t317500\t-0.00566075\n-chr3L\t317500\t322500\t-0.00566075\n-chr3L\t322500\t327500\t-0.01699625\n-chr3L\t327500\t332500\t0.0001575\n-chr3L\t332500\t337500\t-0.030848\n-chr3L\t337500\t342500\t-0.02264125\n-chr3L\t342500\t347500\t-0.01607175\n-chr3L\t347500\t352500\t-0.03003825\n-chr3L\t352500\t357500\t-0.0029145\n-chr3L\t357500\t362500\t-0.0580815\n-chr3L\t362500\t367500\t-0.042338\n-chr3L\t367500\t372500\t-0.0243195\n-chr3L\t372500\t377500\t-0.0233235\n-chr3L\t377500\t382500\t0.01665375\n-chr3L\t382500\t387500\t0.01665375\n-chr3L\t387500\t392500\t0.030134\n-chr3L\t392500\t397500\t0.01966325\n-chr3L\t397500\t402500\t0.0270555\n-chr3L\t402500\t407500\t0.03715275\n-chr3L\t407500\t412500\t0.03215025\n-chr3L\t412500\t417500\t0.007102\n-chr3L\t417500\t422500\t0.01531925\n-chr3L\t422500\t427500\t0.04944275\n-chr3L\t427500\t432500\t0.017395\n-chr3L\t432500\t437500\t0.0233485\n-chr3L\t437500\t442500\t0.010935\n-chr3L\t442500\t447500\t0.015241\n-chr3L\t447500\t452500\t-0.00172725\n-chr3L\t452500\t457500\t-0.006215\n-chr3L\t457500\t462500\t-0.0121685\n-chr3L\t462500\t467500\t-0.0042425\n-chr3L\t467500\t472500\t0.00083775\n-chr3L\t472500\t477500\t-0.02013475\n-chr3L\t477500\t482500\t-0.058266\n-chr3L\t482500\t487500\t-0.07169775\n-chr3L\t487500\t492500\t-0.04601075\n-chr3L\t492500\t497500\t-0.02333825\n-chr3L\t497500\t502500\t-0.00838725\n-chr3L\t502500\t507500\t-0.0641845\n-chr3L\t507500\t512500\t-0.067458\n-chr3L\t512500\t517500\t-0.067458\n-chr3L\t517500\t522500\t-0.09926975\n-chr3L\t522500\t527500\t-0.1060405\n-chr3L\t527500\t532500\t-0.07751675\n-chr3L\t532500\t537500\t-0.07751675\n-chr3L\t537500\t542500\t-0.07751675\n-chr3L\t542500\t547500\t-0.06945475\n-chr3L\t547500\t552500\t-0.06322125\n-chr3L\t552500\t557500\t0.00947925\n-chr3L\t557500\t562500\t-0.02586475\n-chr3L\t562500\t567500\t0.030247\n-chr3L\t567500\t572500\t0.04485875\n-chr3L\t572500\t577500\t0.0579985\n-chr3L\t577500\t582500\t0.085449\n-chr3L\t582500\t587500\t0.10347075\n-chr3L\t587500\t592500\t0.1197795\n-chr3L\t592500\t597500\t0.115187\n-chr3L\t597500\t602500\t0.099483\n-chr3L\t602500\t607500\t0.100333\n-chr3L\t607500\t612500\t0.1935635\n-chr3L\t612500\t6'..b'52500\t27357500\t0.02843225\n-chr3R\t27357500\t27362500\t0.003006\n-chr3R\t27362500\t27367500\t0.02624575\n-chr3R\t27367500\t27372500\t0.01185675\n-chr3R\t27372500\t27377500\t0.0101145\n-chr3R\t27377500\t27382500\t-0.005061\n-chr3R\t27382500\t27387500\t-0.041305\n-chr3R\t27387500\t27392500\t-0.00143125\n-chr3R\t27392500\t27397500\t0.04561275\n-chr3R\t27397500\t27402500\t0.02985575\n-chr3R\t27402500\t27407500\t0.0173185\n-chr3R\t27407500\t27412500\t0.0272775\n-chr3R\t27412500\t27417500\t0.01093175\n-chr3R\t27417500\t27422500\t-0.0499295\n-chr3R\t27422500\t27427500\t-0.04139125\n-chr3R\t27427500\t27432500\t-0.0366555\n-chr3R\t27432500\t27437500\t-0.0366555\n-chr3R\t27437500\t27442500\t-0.04748775\n-chr3R\t27442500\t27447500\t-0.05511025\n-chr3R\t27447500\t27452500\t-0.05736225\n-chr3R\t27452500\t27457500\t-0.0233205\n-chr3R\t27457500\t27462500\t-0.0020265\n-chr3R\t27462500\t27467500\t0.02501975\n-chr3R\t27467500\t27472500\t0.036331\n-chr3R\t27472500\t27477500\t0.036331\n-chr3R\t27477500\t27482500\t0.036331\n-chr3R\t27482500\t27487500\t0.06726625\n-chr3R\t27487500\t27492500\t0.06726625\n-chr3R\t27492500\t27497500\t0.0926245\n-chr3R\t27497500\t27502500\t0.098145\n-chr3R\t27502500\t27507500\t0.088452\n-chr3R\t27507500\t27512500\t0.0991195\n-chr3R\t27512500\t27517500\t0.07477075\n-chr3R\t27517500\t27522500\t0.07477075\n-chr3R\t27522500\t27527500\t0.07477075\n-chr3R\t27527500\t27532500\t0.07477075\n-chr3R\t27532500\t27537500\t0.07667425\n-chr3R\t27537500\t27542500\t0.08198875\n-chr3R\t27542500\t27547500\t0.068792\n-chr3R\t27547500\t27552500\t0.00660575\n-chr3R\t27552500\t27557500\t-0.06866275\n-chr3R\t27557500\t27562500\t-0.063076\n-chr3R\t27562500\t27567500\t-0.063076\n-chr3R\t27567500\t27572500\t-0.08094325\n-chr3R\t27572500\t27577500\t-0.07177225\n-chr3R\t27577500\t27582500\t0.00014175\n-chr3R\t27582500\t27587500\t-0.004425\n-chr3R\t27587500\t27592500\t-0.0055905\n-chr3R\t27592500\t27597500\t0.0107725\n-chr3R\t27597500\t27602500\t0.012076\n-chr3R\t27602500\t27607500\t0.00204375\n-chr3R\t27607500\t27612500\t0.01391525\n-chr3R\t27612500\t27617500\t0.02616875\n-chr3R\t27617500\t27622500\t0.02862975\n-chr3R\t27622500\t27627500\t0.02862975\n-chr3R\t27627500\t27632500\t0.03521625\n-chr3R\t27632500\t27637500\t0.00040125\n-chr3R\t27637500\t27642500\t0.0303095\n-chr3R\t27642500\t27647500\t0.090842\n-chr3R\t27647500\t27652500\t0.10491025\n-chr3R\t27652500\t27657500\t0.11880175\n-chr3R\t27657500\t27662500\t0.09649925\n-chr3R\t27662500\t27667500\t0.07636225\n-chr3R\t27667500\t27672500\t0.06380525\n-chr3R\t27672500\t27677500\t0.04760175\n-chr3R\t27677500\t27682500\t0.02274975\n-chr3R\t27682500\t27687500\t0.015637\n-chr3R\t27687500\t27692500\t0.015637\n-chr3R\t27692500\t27697500\t0.025063\n-chr3R\t27697500\t27702500\t-0.01535\n-chr3R\t27702500\t27707500\t-0.01535\n-chr3R\t27707500\t27712500\t0.00155075\n-chr3R\t27712500\t27717500\t0.006288\n-chr3R\t27717500\t27722500\t0.006288\n-chr3R\t27722500\t27727500\t-0.00858325\n-chr3R\t27727500\t27732500\t0.02622075\n-chr3R\t27732500\t27737500\t0.097312\n-chr3R\t27737500\t27742500\t0.067952\n-chr3R\t27742500\t27747500\t0.0387865\n-chr3R\t27747500\t27752500\t0.01357725\n-chr3R\t27752500\t27757500\t0.02531675\n-chr3R\t27757500\t27762500\t0.033303\n-chr3R\t27762500\t27767500\t0.050386\n-chr3R\t27767500\t27772500\t0.0229625\n-chr3R\t27772500\t27777500\t0.04058825\n-chr3R\t27777500\t27782500\t0.03747975\n-chr3R\t27782500\t27787500\t0.0294565\n-chr3R\t27787500\t27792500\t0.07453225\n-chr3R\t27792500\t27797500\t0.08362425\n-chr3R\t27797500\t27802500\t0.06882\n-chr3R\t27802500\t27807500\t0.075945\n-chr3R\t27807500\t27812500\t0.11806575\n-chr3R\t27812500\t27817500\t0.152855\n-chr3R\t27817500\t27822500\t0.1721425\n-chr3R\t27822500\t27827500\t0.17090925\n-chr3R\t27827500\t27832500\t0.15466375\n-chr3R\t27832500\t27837500\t0.1765955\n-chr3R\t27837500\t27842500\t0.16170225\n-chr3R\t27842500\t27847500\t0.16431675\n-chr3R\t27847500\t27852500\t0.20353925\n-chr3R\t27852500\t27857500\t0.19259975\n-chr3R\t27857500\t27862500\t0.13903775\n-chr3R\t27862500\t27867500\t0.1658075\n-chr3R\t27867500\t27872500\t0.033584\n-chr3R\t27872500\t27877500\t-0.044813\n-chr3R\t27877500\t27882500\t-0.1079445\n-chr3R\t27882500\t27887500\t-0.1024605\n-chr3R\t27887500\t27892500\t-0.09179375\n-chr3R\t27892500\t27897500\t-0.1533095\n-chr3R\t27897500\t27902500\t-0.15876925\n-chr3R\t27902500\t27905026\t0.0\n-chrUextra\t2500\t29002328\t0.0\n-chrM\t2500\t17258\t0.0\n-chr3LHet\t2500\t2555245\t0.0\n'
b
diff -r 38a612a120a8 -r dbf4afa03b00 test-data/find_TADs/multiBonferroni_tad_score.bm
--- a/test-data/find_TADs/multiBonferroni_tad_score.bm Fri Apr 27 03:31:20 2018 -0400
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
b
b'@@ -1,23830 +0,0 @@\n-#{"step":20000,"minDepth":60000,"maxDepth":180000,"binsize":5000}\n-chr2RHet\t0\t5000\t0.000000\t0.000000\t0.000000\t0.000000\n-chr2RHet\t3285000\t3288761\t0.000000\t0.000000\t0.000000\t0.000000\n-chr3RHet\t0\t5000\t0.000000\t0.000000\t0.000000\t0.000000\n-chr3RHet\t2515000\t2517507\t0.000000\t0.000000\t0.000000\t0.000000\n-chr2LHet\t0\t5000\t0.000000\t0.000000\t0.000000\t0.000000\n-chr2LHet\t365000\t368872\t0.000000\t0.000000\t0.000000\t0.000000\n-chr4\t0\t5000\t0.000000\t0.000000\t0.000000\t0.000000\n-chr4\t1350000\t1351857\t0.000000\t0.000000\t0.000000\t0.000000\n-chrYHet\t0\t5000\t0.000000\t0.000000\t0.000000\t0.000000\n-chrYHet\t345000\t347038\t0.000000\t0.000000\t0.000000\t0.000000\n-chr3L\t0\t5000\t0.000000\t0.000000\t0.000000\t0.000000\n-chr3L\t5000\t10000\t-0.185185\t-0.171295\t-0.149986\t-0.132483\n-chr3L\t10000\t15000\t-0.179233\t-0.165874\t-0.145865\t-0.129358\n-chr3L\t15000\t20000\t-0.174239\t-0.161260\t-0.142558\t-0.126617\n-chr3L\t20000\t25000\t-0.170014\t-0.157559\t-0.139686\t-0.124234\n-chr3L\t25000\t30000\t-0.165979\t-0.154152\t-0.136908\t-0.122052\n-chr3L\t30000\t35000\t-0.162203\t-0.150978\t-0.134318\t-0.119977\n-chr3L\t35000\t40000\t-0.158727\t-0.148088\t-0.131965\t-0.118053\n-chr3L\t40000\t45000\t-0.155567\t-0.145272\t-0.129738\t-0.116204\n-chr3L\t45000\t50000\t-0.152607\t-0.142713\t-0.127607\t-0.114504\n-chr3L\t50000\t55000\t-0.149926\t-0.140331\t-0.125612\t-0.112924\n-chr3L\t55000\t60000\t-0.147348\t-0.138093\t-0.123706\t-0.111408\n-chr3L\t60000\t65000\t-0.092610\t-0.096797\t-0.095758\t-0.090930\n-chr3L\t65000\t70000\t-0.063836\t-0.077794\t-0.082758\t-0.081320\n-chr3L\t70000\t75000\t-0.063836\t-0.013812\t-0.039782\t-0.049895\n-chr3L\t75000\t80000\t0.022439\t0.060152\t0.009858\t-0.013619\n-chr3L\t80000\t85000\t0.152571\t0.093803\t0.032622\t0.003119\n-chr3L\t85000\t90000\t0.214709\t0.074296\t0.013186\t-0.010832\n-chr3L\t90000\t95000\t0.214709\t0.074296\t0.007552\t-0.014736\n-chr3L\t95000\t100000\t0.214709\t0.074296\t0.002590\t-0.018149\n-chr3L\t100000\t105000\t0.221372\t0.078043\t0.000227\t-0.019667\n-chr3L\t105000\t110000\t0.221372\t0.078043\t-0.003723\t-0.022378\n-chr3L\t110000\t115000\t0.221372\t0.078043\t-0.007240\t-0.024763\n-chr3L\t115000\t120000\t0.221372\t0.078043\t-0.010366\t-0.026889\n-chr3L\t120000\t125000\t0.221372\t0.078043\t-0.013170\t-0.028800\n-chr3L\t125000\t130000\t0.111997\t0.016520\t-0.040513\t-0.049591\n-chr3L\t130000\t135000\t0.067050\t0.048925\t-0.026111\t-0.040724\n-chr3L\t135000\t140000\t0.016687\t0.046933\t-0.026996\t-0.042335\n-chr3L\t140000\t145000\t-0.076765\t-0.035198\t-0.063499\t-0.065986\n-chr3L\t145000\t150000\t-0.022697\t-0.059245\t-0.060247\t-0.064060\n-chr3L\t150000\t155000\t-0.030134\t-0.063428\t-0.062106\t-0.065206\n-chr3L\t155000\t160000\t-0.053449\t-0.076543\t-0.067935\t-0.068488\n-chr3L\t160000\t165000\t-0.076765\t-0.058294\t-0.073764\t-0.071529\n-chr3L\t165000\t170000\t-0.144931\t-0.096638\t-0.090806\t-0.080292\n-chr3L\t170000\t175000\t-0.144931\t-0.096638\t-0.090806\t-0.080292\n-chr3L\t175000\t180000\t-0.144931\t-0.096638\t-0.090806\t-0.080292\n-chr3L\t180000\t185000\t-0.089172\t-0.096638\t-0.090806\t-0.080292\n-chr3L\t185000\t190000\t-0.065857\t-0.083523\t-0.084977\t-0.077209\n-chr3L\t190000\t195000\t-0.042541\t-0.042285\t-0.066649\t-0.067515\n-chr3L\t195000\t200000\t-0.065857\t-0.055399\t-0.072477\t-0.055896\n-chr3L\t200000\t205000\t-0.051757\t-0.011064\t-0.052773\t-0.045474\n-chr3L\t205000\t210000\t-0.014382\t0.013201\t-0.041989\t-0.029186\n-chr3L\t210000\t215000\t-0.014382\t0.013201\t-0.041989\t-0.029186\n-chr3L\t215000\t220000\t-0.014382\t0.013201\t-0.041989\t-0.029186\n-chr3L\t220000\t225000\t0.093474\t0.037466\t-0.031204\t-0.023482\n-chr3L\t225000\t230000\t0.093474\t0.006101\t-0.031204\t-0.023482\n-chr3L\t230000\t235000\t0.056060\t-0.014945\t-0.040558\t-0.014094\n-chr3L\t235000\t240000\t0.108983\t0.014825\t-0.027327\t-0.021797\n-chr3L\t240000\t245000\t0.079375\t0.026294\t-0.016159\t-0.026474\n-chr3L\t245000\t250000\t0.079375\t0.026294\t-0.016159\t-0.026474\n-chr3L\t250000\t255000\t0.006063\t0.013179\t-0.021988\t-0.029557\n-chr3L\t255000\t260000\t0.012922\t-0.011086\t-0.016881\t-0.026856\n-chr3L\t260000\t265000\t-0.051797\t-0.011086\t-0.016881\t-0.026856\n-chr3L\t265000\t270000\t-0.002735\t-0.011612\t-0.017114\t-0.026979\n-chr3L\t270000\t275000\t-0.008457\t-0.014831\t-0.018545\t-0.027736\n-chr3L\t275000\t280000\t0.040924\t0.012946\t-0.006200\t-0.021206\n-chr3L\t280000\t285000\t0.043057\t0.0848'..b'867\n-chr3R\t27615000\t27620000\t0.096590\t0.009047\t-0.006829\t0.005867\n-chr3R\t27620000\t27625000\t0.088048\t0.036259\t-0.012602\t0.002814\n-chr3R\t27625000\t27630000\t0.088048\t0.036259\t-0.012602\t0.002814\n-chr3R\t27630000\t27635000\t0.088048\t0.036259\t0.004630\t0.011928\n-chr3R\t27635000\t27640000\t0.016439\t-0.004021\t-0.013272\t0.002459\n-chr3R\t27640000\t27645000\t0.067730\t0.028353\t0.001116\t0.024039\n-chr3R\t27645000\t27650000\t0.192236\t0.098387\t0.032243\t0.040502\n-chr3R\t27650000\t27655000\t0.221172\t0.114663\t0.039477\t0.044329\n-chr3R\t27655000\t27660000\t0.221172\t0.157286\t0.039477\t0.057272\n-chr3R\t27660000\t27665000\t0.169178\t0.121746\t0.039477\t0.055596\n-chr3R\t27665000\t27670000\t0.105701\t0.086040\t0.038175\t0.075533\n-chr3R\t27670000\t27675000\t0.056946\t0.097388\t0.030236\t0.070651\n-chr3R\t27675000\t27680000\t0.056946\t0.068141\t0.017238\t0.048082\n-chr3R\t27680000\t27685000\t-0.038675\t0.079148\t0.007562\t0.042964\n-chr3R\t27685000\t27690000\t-0.044280\t0.033373\t0.024916\t0.048539\n-chr3R\t27690000\t27695000\t-0.044280\t0.033373\t0.024916\t0.048539\n-chr3R\t27695000\t27700000\t-0.044280\t0.033373\t0.062620\t0.048539\n-chr3R\t27700000\t27705000\t-0.084029\t-0.053780\t0.048357\t0.028052\n-chr3R\t27705000\t27710000\t-0.084029\t-0.053780\t0.048357\t0.028052\n-chr3R\t27710000\t27715000\t-0.045339\t-0.025686\t0.058030\t0.019198\n-chr3R\t27715000\t27720000\t-0.045339\t-0.025686\t0.076979\t0.019198\n-chr3R\t27720000\t27725000\t-0.045339\t-0.025686\t0.076979\t0.019198\n-chr3R\t27725000\t27730000\t-0.103607\t0.016512\t0.033564\t0.019198\n-chr3R\t27730000\t27735000\t-0.050204\t0.046552\t0.068839\t0.039696\n-chr3R\t27735000\t27740000\t0.046239\t0.185635\t0.092949\t0.064425\n-chr3R\t27740000\t27745000\t0.007548\t0.121674\t0.083277\t0.059309\n-chr3R\t27745000\t27750000\t0.007548\t0.001158\t0.083277\t0.063163\n-chr3R\t27750000\t27755000\t-0.026993\t-0.060469\t0.078472\t0.063299\n-chr3R\t27755000\t27760000\t-0.026993\t-0.017832\t0.078472\t0.067620\n-chr3R\t27760000\t27765000\t-0.001206\t-0.003327\t0.070352\t0.067393\n-chr3R\t27765000\t27770000\t0.037229\t-0.024344\t0.098718\t0.089941\n-chr3R\t27770000\t27775000\t-0.027695\t-0.060863\t0.099720\t0.080688\n-chr3R\t27775000\t27780000\t-0.027695\t-0.060863\t0.164400\t0.086511\n-chr3R\t27780000\t27785000\t-0.027695\t-0.060863\t0.145646\t0.092831\n-chr3R\t27785000\t27790000\t-0.027695\t-0.060863\t0.106650\t0.099734\n-chr3R\t27790000\t27795000\t0.039961\t0.063357\t0.089896\t0.104915\n-chr3R\t27795000\t27800000\t0.021098\t0.084764\t0.107981\t0.120654\n-chr3R\t27800000\t27805000\t-0.037165\t0.094196\t0.100334\t0.117915\n-chr3R\t27805000\t27810000\t-0.027092\t0.130175\t0.075438\t0.125259\n-chr3R\t27810000\t27815000\t0.108330\t0.137264\t0.087805\t0.138864\n-chr3R\t27815000\t27820000\t0.213050\t0.158958\t0.113384\t0.126028\n-chr3R\t27820000\t27825000\t0.278008\t0.153292\t0.121643\t0.135627\n-chr3R\t27825000\t27830000\t0.222549\t0.164302\t0.142172\t0.154614\n-chr3R\t27830000\t27835000\t0.153621\t0.136752\t0.157731\t0.170551\n-chr3R\t27835000\t27840000\t0.189472\t0.176743\t0.191033\t0.149134\n-chr3R\t27840000\t27845000\t0.140679\t0.164483\t0.190586\t0.151061\n-chr3R\t27845000\t27850000\t0.140679\t0.130683\t0.214692\t0.171213\n-chr3R\t27850000\t27855000\t0.223557\t0.140759\t0.273233\t0.176608\n-chr3R\t27855000\t27860000\t0.189488\t0.166013\t0.211109\t0.203789\n-chr3R\t27860000\t27865000\t0.090674\t0.097172\t0.179576\t0.188729\n-chr3R\t27865000\t27870000\t0.060550\t0.141907\t0.227388\t0.233385\n-chr3R\t27870000\t27875000\t-0.035456\t0.017860\t0.044535\t0.107397\n-chr3R\t27875000\t27880000\t-0.107824\t-0.110119\t-0.030346\t0.069037\n-chr3R\t27880000\t27885000\t-0.162785\t-0.151946\t-0.133607\t0.016560\n-chr3R\t27885000\t27890000\t-0.166657\t-0.155451\t-0.136374\t0.048640\n-chr3R\t27890000\t27895000\t-0.171304\t-0.159528\t-0.139673\t0.103330\n-chr3R\t27895000\t27900000\t-0.177135\t-0.164497\t-0.143549\t-0.128057\n-chr3R\t27900000\t27905000\t-0.184873\t-0.170507\t-0.148271\t-0.131426\n-chr3R\t27905000\t27905053\t0.000000\t0.000000\t0.000000\t0.000000\n-chrUextra\t0\t5000\t0.000000\t0.000000\t0.000000\t0.000000\n-chrUextra\t29000000\t29004656\t0.000000\t0.000000\t0.000000\t0.000000\n-chrM\t0\t5000\t0.000000\t0.000000\t0.000000\t0.000000\n-chrM\t15000\t19517\t0.000000\t0.000000\t0.000000\t0.000000\n-chr3LHet\t0\t5000\t0.000000\t0.000000\t0.000000\t0.000000\n-chr3LHet\t2555000\t2555491\t0.000000\t0.000000\t0.000000\t0.000000\n'
b
diff -r 38a612a120a8 -r dbf4afa03b00 test-data/find_TADs/multiBonferroni_zscore_matrix.h5
b
Binary file test-data/find_TADs/multiBonferroni_zscore_matrix.h5 has changed
b
diff -r 38a612a120a8 -r dbf4afa03b00 test-data/find_TADs/multiFDR_zscore_matrix.h5
b
Binary file test-data/find_TADs/multiFDR_zscore_matrix.h5 has changed
b
diff -r 38a612a120a8 -r dbf4afa03b00 test-data/find_TADs/multiNone_boundaries.bed
--- a/test-data/find_TADs/multiNone_boundaries.bed Fri Apr 27 03:31:20 2018 -0400
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
b
b'@@ -1,1408 +0,0 @@\n-chr3L\t162500\t167500\tB00043\t-0.10316675\t.\n-chr3L\t257500\t262500\tB00062\t-0.026655\t.\n-chr3L\t332500\t337500\tB00077\t-0.030848\t.\n-chr3L\t357500\t362500\tB00082\t-0.0580815\t.\n-chr3L\t482500\t487500\tB00107\t-0.07169775\t.\n-chr3L\t522500\t527500\tB00115\t-0.1060405\t.\n-chr3L\t677500\t682500\tB00146\t-0.0148855\t.\n-chr3L\t702500\t707500\tB00151\t0.002784\t.\n-chr3L\t737500\t742500\tB00158\t0.00949975\t.\n-chr3L\t867500\t872500\tB00184\t-0.09546975\t.\n-chr3L\t1007500\t1012500\tB00212\t-0.05182175\t.\n-chr3L\t1037500\t1042500\tB00218\t-0.05874875\t.\n-chr3L\t1107500\t1112500\tB00232\t-0.048349\t.\n-chr3L\t1207500\t1212500\tB00252\t-0.0567565\t.\n-chr3L\t1242500\t1247500\tB00259\t-0.0641435\t.\n-chr3L\t1297500\t1302500\tB00270\t-0.091379\t.\n-chr3L\t1462500\t1467500\tB00303\t-0.01307225\t.\n-chr3L\t1532500\t1537500\tB00317\t-0.08711525\t.\n-chr3L\t1577500\t1582500\tB00326\t-0.08235875\t.\n-chr3L\t1637500\t1642500\tB00338\t-0.0628755\t.\n-chr3L\t1667500\t1672500\tB00344\t-0.037945\t.\n-chr3L\t1732500\t1737500\tB00357\t-0.050313\t.\n-chr3L\t1812500\t1817500\tB00373\t-0.01723525\t.\n-chr3L\t1847500\t1852500\tB00380\t-0.0259975\t.\n-chr3L\t1922500\t1927500\tB00395\t8.325e-05\t.\n-chr3L\t2152500\t2157500\tB00441\t-0.0401965\t.\n-chr3L\t2257500\t2262500\tB00462\t-0.07518575\t.\n-chr3L\t2387500\t2392500\tB00488\t-0.072071\t.\n-chr3L\t2457500\t2462500\tB00502\t-0.09132325\t.\n-chr3L\t2557500\t2562500\tB00522\t-0.09179675\t.\n-chr3L\t2597500\t2602500\tB00530\t-0.0934855\t.\n-chr3L\t2737500\t2742500\tB00558\t-0.08927875\t.\n-chr3L\t2882500\t2887500\tB00587\t-0.08972575\t.\n-chr3L\t2942500\t2947500\tB00599\t0.029899\t.\n-chr3L\t2957500\t2962500\tB00602\t0.0356865\t.\n-chr3L\t3042500\t3047500\tB00619\t-0.00466875\t.\n-chr3L\t3132500\t3137500\tB00637\t0.055702\t.\n-chr3L\t3217500\t3222500\tB00654\t-0.059463\t.\n-chr3L\t3252500\t3257500\tB00661\t-0.045796\t.\n-chr3L\t3312500\t3317500\tB00673\t-0.05499875\t.\n-chr3L\t3342500\t3347500\tB00679\t-0.04234075\t.\n-chr3L\t3472500\t3477500\tB00705\t-0.05097675\t.\n-chr3L\t3512500\t3517500\tB00713\t-0.012488\t.\n-chr3L\t3542500\t3547500\tB00719\t0.02457925\t.\n-chr3L\t3612500\t3617500\tB00733\t0.019683\t.\n-chr3L\t3667500\t3672500\tB00744\t0.09945325\t.\n-chr3L\t3762500\t3767500\tB00763\t-0.047454\t.\n-chr3L\t3782500\t3787500\tB00767\t-0.041084\t.\n-chr3L\t3822500\t3827500\tB00775\t-0.06101175\t.\n-chr3L\t3897500\t3902500\tB00790\t-0.0684535\t.\n-chr3L\t3997500\t4002500\tB00810\t-0.03007875\t.\n-chr3L\t4117500\t4122500\tB00834\t-0.0807515\t.\n-chr3L\t4162500\t4167500\tB00843\t-0.088488\t.\n-chr3L\t4197500\t4202500\tB00850\t-0.098724\t.\n-chr3L\t4217500\t4222500\tB00854\t-0.088911\t.\n-chr3L\t4267500\t4272500\tB00864\t-0.11633575\t.\n-chr3L\t4362500\t4367500\tB00883\t-0.0944955\t.\n-chr3L\t4402500\t4407500\tB00891\t-0.07463925\t.\n-chr3L\t4487500\t4492500\tB00908\t0.00287075\t.\n-chr3L\t4622500\t4627500\tB00935\t0.04064075\t.\n-chr3L\t4647500\t4652500\tB00940\t0.03764975\t.\n-chr3L\t4787500\t4792500\tB00968\t-0.06999725\t.\n-chr3L\t4892500\t4897500\tB00989\t-0.076914\t.\n-chr3L\t4997500\t5002500\tB01010\t-0.0378805\t.\n-chr3L\t5107500\t5112500\tB01032\t-0.061049\t.\n-chr3L\t5237500\t5242500\tB01058\t0.07173475\t.\n-chr3L\t5277500\t5282500\tB01066\t0.02598475\t.\n-chr3L\t5357500\t5362500\tB01082\t-0.06976425\t.\n-chr3L\t5462500\t5467500\tB01103\t0.0082995\t.\n-chr3L\t5552500\t5557500\tB01121\t-0.03433\t.\n-chr3L\t5572500\t5577500\tB01125\t0.00900825\t.\n-chr3L\t5742500\t5747500\tB01159\t-0.09901225\t.\n-chr3L\t5812500\t5817500\tB01173\t-0.08504275\t.\n-chr3L\t5872500\t5877500\tB01185\t-0.107036\t.\n-chr3L\t5957500\t5962500\tB01202\t-0.0645035\t.\n-chr3L\t5987500\t5992500\tB01208\t-0.06534175\t.\n-chr3L\t6117500\t6122500\tB01234\t-0.06653425\t.\n-chr3L\t6192500\t6197500\tB01249\t-0.08219225\t.\n-chr3L\t6227500\t6232500\tB01256\t-0.07949925\t.\n-chr3L\t6252500\t6257500\tB01261\t-0.0959415\t.\n-chr3L\t6367500\t6372500\tB01284\t-0.0155925\t.\n-chr3L\t6442500\t6447500\tB01299\t-0.0843135\t.\n-chr3L\t6487500\t6492500\tB01308\t-0.07350925\t.\n-chr3L\t6557500\t6562500\tB01322\t0.050254\t.\n-chr3L\t6582500\t6587500\tB01327\t0.05181025\t.\n-chr3L\t6727500\t6732500\tB01356\t-0.08674075\t.\n-chr3L\t6872500\t6877500\tB01385\t0.015592\t.\n-chr3L\t6957500\t6962500\tB01402\t-0.06386025\t.\n-chr3L\t7072500\t7077500\tB01425\t-0.05008325\t.\n-chr3L\t7117500\t7122500\tB01434\t-0.04982075\t.\n-chr3L\t7142500\t7147500\tB01439\t-0.049721\t.\n-chr3L\t7302500\t7307500\tB01471\t-0.10379175\t.\n-chr3L\t7367500\t7372500\tB01484\t-0.0351445\t.\n-'..b'9697500\tB22180\t-0.10521125\t.\n-chr3R\t19737500\t19742500\tB22189\t-0.1117525\t.\n-chr3R\t19932500\t19937500\tB22228\t-0.10631075\t.\n-chr3R\t20017500\t20022500\tB22245\t-0.083403\t.\n-chr3R\t20047500\t20052500\tB22251\t-0.0909175\t.\n-chr3R\t20147500\t20152500\tB22271\t-0.0227935\t.\n-chr3R\t20217500\t20222500\tB22285\t-0.034021\t.\n-chr3R\t20332500\t20337500\tB22308\t-0.10360825\t.\n-chr3R\t20372500\t20377500\tB22316\t-0.11469275\t.\n-chr3R\t20452500\t20457500\tB22332\t-0.10752325\t.\n-chr3R\t20612500\t20617500\tB22364\t-0.099168\t.\n-chr3R\t20707500\t20712500\tB22383\t-0.07351875\t.\n-chr3R\t20717500\t20722500\tB22385\t-0.0705095\t.\n-chr3R\t20762500\t20767500\tB22394\t-0.0862985\t.\n-chr3R\t20857500\t20862500\tB22413\t-0.01276525\t.\n-chr3R\t20897500\t20902500\tB22421\t-0.02185325\t.\n-chr3R\t20932500\t20937500\tB22428\t-0.05891975\t.\n-chr3R\t20962500\t20967500\tB22434\t-0.0613935\t.\n-chr3R\t21082500\t21087500\tB22458\t-0.094928\t.\n-chr3R\t21172500\t21177500\tB22476\t-0.0413955\t.\n-chr3R\t21217500\t21222500\tB22485\t-0.05028725\t.\n-chr3R\t21317500\t21322500\tB22505\t-0.086029\t.\n-chr3R\t21332500\t21337500\tB22508\t-0.06100175\t.\n-chr3R\t21387500\t21392500\tB22519\t-0.0656765\t.\n-chr3R\t21472500\t21477500\tB22536\t-0.0932985\t.\n-chr3R\t21612500\t21617500\tB22564\t-0.081974\t.\n-chr3R\t21727500\t21732500\tB22587\t0.07025075\t.\n-chr3R\t21817500\t21822500\tB22605\t-0.00145975\t.\n-chr3R\t21842500\t21847500\tB22610\t0.0360515\t.\n-chr3R\t21947500\t21952500\tB22631\t0.002742\t.\n-chr3R\t21987500\t21992500\tB22639\t0.00713375\t.\n-chr3R\t22072500\t22077500\tB22656\t-0.087915\t.\n-chr3R\t22217500\t22222500\tB22685\t0.0614505\t.\n-chr3R\t22267500\t22272500\tB22695\t-0.02575325\t.\n-chr3R\t22307500\t22312500\tB22703\t-0.04946475\t.\n-chr3R\t22377500\t22382500\tB22717\t-0.055847\t.\n-chr3R\t22497500\t22502500\tB22741\t-0.0631105\t.\n-chr3R\t22517500\t22522500\tB22745\t-0.062648\t.\n-chr3R\t22602500\t22607500\tB22762\t-0.011252\t.\n-chr3R\t22692500\t22697500\tB22780\t-0.089033\t.\n-chr3R\t22777500\t22782500\tB22797\t-0.04050025\t.\n-chr3R\t22882500\t22887500\tB22818\t-0.05683475\t.\n-chr3R\t22982500\t22987500\tB22838\t-0.0237815\t.\n-chr3R\t23107500\t23112500\tB22863\t-0.100625\t.\n-chr3R\t23182500\t23187500\tB22878\t-0.00294725\t.\n-chr3R\t23192500\t23197500\tB22880\t-0.00275775\t.\n-chr3R\t23412500\t23417500\tB22924\t-0.090027\t.\n-chr3R\t23557500\t23562500\tB22953\t-0.104602\t.\n-chr3R\t23767500\t23772500\tB22995\t-0.1119105\t.\n-chr3R\t23812500\t23817500\tB23004\t-0.0660765\t.\n-chr3R\t23917500\t23922500\tB23025\t-0.04218475\t.\n-chr3R\t24027500\t24032500\tB23047\t-0.05579575\t.\n-chr3R\t24157500\t24162500\tB23073\t-0.01546725\t.\n-chr3R\t24202500\t24207500\tB23082\t-0.0326015\t.\n-chr3R\t24342500\t24347500\tB23110\t-0.0623065\t.\n-chr3R\t24372500\t24377500\tB23116\t-0.0749395\t.\n-chr3R\t24447500\t24452500\tB23131\t-0.09836075\t.\n-chr3R\t24622500\t24627500\tB23166\t-0.03171375\t.\n-chr3R\t24742500\t24747500\tB23190\t-0.08589625\t.\n-chr3R\t24882500\t24887500\tB23218\t-0.09323725\t.\n-chr3R\t24992500\t24997500\tB23240\t-0.0589785\t.\n-chr3R\t25087500\t25092500\tB23259\t0.03674225\t.\n-chr3R\t25162500\t25167500\tB23274\t-0.0462465\t.\n-chr3R\t25327500\t25332500\tB23307\t-0.08303325\t.\n-chr3R\t25402500\t25407500\tB23322\t-0.00546225\t.\n-chr3R\t25567500\t25572500\tB23355\t-0.04654075\t.\n-chr3R\t25577500\t25582500\tB23357\t-0.01871575\t.\n-chr3R\t25727500\t25732500\tB23387\t-0.00858875\t.\n-chr3R\t25877500\t25882500\tB23417\t-0.10581625\t.\n-chr3R\t25987500\t25992500\tB23439\t-0.090403\t.\n-chr3R\t26047500\t26052500\tB23451\t-0.0935315\t.\n-chr3R\t26177500\t26182500\tB23477\t-0.11469275\t.\n-chr3R\t26272500\t26277500\tB23496\t-0.1002735\t.\n-chr3R\t26327500\t26332500\tB23507\t-0.092304\t.\n-chr3R\t26487500\t26492500\tB23539\t0.0627965\t.\n-chr3R\t26562500\t26567500\tB23554\t-0.01974475\t.\n-chr3R\t26637500\t26642500\tB23569\t-0.07430725\t.\n-chr3R\t26712500\t26717500\tB23584\t-0.049789\t.\n-chr3R\t26867500\t26872500\tB23615\t-0.0249905\t.\n-chr3R\t27042500\t27047500\tB23650\t-0.074189\t.\n-chr3R\t27152500\t27157500\tB23672\t-0.00609925\t.\n-chr3R\t27182500\t27187500\tB23678\t-0.01281025\t.\n-chr3R\t27247500\t27252500\tB23691\t-0.04990275\t.\n-chr3R\t27382500\t27387500\tB23718\t-0.041305\t.\n-chr3R\t27417500\t27422500\tB23725\t-0.0499295\t.\n-chr3R\t27567500\t27572500\tB23755\t-0.08094325\t.\n-chr3R\t27697500\t27702500\tB23781\t-0.01535\t.\n-chr3R\t27747500\t27752500\tB23791\t0.01357725\t.\n-chr3R\t27767500\t27772500\tB23795\t0.0229625\t.\n'
b
diff -r 38a612a120a8 -r dbf4afa03b00 test-data/find_TADs/multiNone_boundaries.gff
--- a/test-data/find_TADs/multiNone_boundaries.gff Fri Apr 27 03:31:20 2018 -0400
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
b
b'@@ -1,1408 +0,0 @@\n-chr3L\tHiCExplorer\tboundary\t162500\t167500\t-0.10316675\t.\t.\tID=B00043;delta=0.0645107368421;pvalue=0.414620099134;tad_sep=-0.10316675\n-chr3L\tHiCExplorer\tboundary\t257500\t262500\t-0.026655\t.\t.\tID=B00062;delta=0.0383848026316;pvalue=0.674283084976;tad_sep=-0.026655\n-chr3L\tHiCExplorer\tboundary\t332500\t337500\t-0.030848\t.\t.\tID=B00077;delta=0.0331458421053;pvalue=0.748578488932;tad_sep=-0.030848\n-chr3L\tHiCExplorer\tboundary\t357500\t362500\t-0.0580815\t.\t.\tID=B00082;delta=0.0546451184211;pvalue=0.411792655248;tad_sep=-0.0580815\n-chr3L\tHiCExplorer\tboundary\t482500\t487500\t-0.07169775\t.\t.\tID=B00107;delta=0.0361521710526;pvalue=0.503736281368;tad_sep=-0.07169775\n-chr3L\tHiCExplorer\tboundary\t522500\t527500\t-0.1060405\t.\t.\tID=B00115;delta=0.0607123552632;pvalue=0.409780073639;tad_sep=-0.1060405\n-chr3L\tHiCExplorer\tboundary\t677500\t682500\t-0.0148855\t.\t.\tID=B00146;delta=0.131560763158;pvalue=0.100696558537;tad_sep=-0.0148855\n-chr3L\tHiCExplorer\tboundary\t702500\t707500\t0.002784\t.\t.\tID=B00151;delta=0.0290640789474;pvalue=0.0467137020614;tad_sep=0.002784\n-chr3L\tHiCExplorer\tboundary\t737500\t742500\t0.00949975\t.\t.\tID=B00158;delta=0.0521745789474;pvalue=0.489399813333;tad_sep=0.00949975\n-chr3L\tHiCExplorer\tboundary\t867500\t872500\t-0.09546975\t.\t.\tID=B00184;delta=0.0513249605263;pvalue=0.400201394819;tad_sep=-0.09546975\n-chr3L\tHiCExplorer\tboundary\t1007500\t1012500\t-0.05182175\t.\t.\tID=B00212;delta=0.0427919605263;pvalue=0.672733336625;tad_sep=-0.05182175\n-chr3L\tHiCExplorer\tboundary\t1037500\t1042500\t-0.05874875\t.\t.\tID=B00218;delta=0.0230098947368;pvalue=0.755560160507;tad_sep=-0.05874875\n-chr3L\tHiCExplorer\tboundary\t1107500\t1112500\t-0.048349\t.\t.\tID=B00232;delta=0.0230250526316;pvalue=0.888587028967;tad_sep=-0.048349\n-chr3L\tHiCExplorer\tboundary\t1207500\t1212500\t-0.0567565\t.\t.\tID=B00252;delta=0.0157581052632;pvalue=0.800037725246;tad_sep=-0.0567565\n-chr3L\tHiCExplorer\tboundary\t1242500\t1247500\t-0.0641435\t.\t.\tID=B00259;delta=0.0260385921053;pvalue=0.954297852598;tad_sep=-0.0641435\n-chr3L\tHiCExplorer\tboundary\t1297500\t1302500\t-0.091379\t.\t.\tID=B00270;delta=0.0368676315789;pvalue=0.631433509478;tad_sep=-0.091379\n-chr3L\tHiCExplorer\tboundary\t1462500\t1467500\t-0.01307225\t.\t.\tID=B00303;delta=0.0279480657895;pvalue=0.605503787241;tad_sep=-0.01307225\n-chr3L\tHiCExplorer\tboundary\t1532500\t1537500\t-0.08711525\t.\t.\tID=B00317;delta=0.0325782763158;pvalue=0.900898397027;tad_sep=-0.08711525\n-chr3L\tHiCExplorer\tboundary\t1577500\t1582500\t-0.08235875\t.\t.\tID=B00326;delta=0.0138771973684;pvalue=0.819230752873;tad_sep=-0.08235875\n-chr3L\tHiCExplorer\tboundary\t1637500\t1642500\t-0.0628755\t.\t.\tID=B00338;delta=0.0229921710526;pvalue=0.763101258064;tad_sep=-0.0628755\n-chr3L\tHiCExplorer\tboundary\t1667500\t1672500\t-0.037945\t.\t.\tID=B00344;delta=0.0121138026316;pvalue=0.876302477922;tad_sep=-0.037945\n-chr3L\tHiCExplorer\tboundary\t1732500\t1737500\t-0.050313\t.\t.\tID=B00357;delta=0.0373916184211;pvalue=0.699787217442;tad_sep=-0.050313\n-chr3L\tHiCExplorer\tboundary\t1812500\t1817500\t-0.01723525\t.\t.\tID=B00373;delta=0.0390851973684;pvalue=0.524726986549;tad_sep=-0.01723525\n-chr3L\tHiCExplorer\tboundary\t1847500\t1852500\t-0.0259975\t.\t.\tID=B00380;delta=0.0458929868421;pvalue=0.543337134063;tad_sep=-0.0259975\n-chr3L\tHiCExplorer\tboundary\t1922500\t1927500\t8.325e-05\t.\t.\tID=B00395;delta=0.0419640921053;pvalue=0.718745147352;tad_sep=8.325e-05\n-chr3L\tHiCExplorer\tboundary\t2152500\t2157500\t-0.0401965\t.\t.\tID=B00441;delta=0.0494363815789;pvalue=0.876302477922;tad_sep=-0.0401965\n-chr3L\tHiCExplorer\tboundary\t2257500\t2262500\t-0.07518575\t.\t.\tID=B00462;delta=0.0447468026316;pvalue=0.522884086855;tad_sep=-0.07518575\n-chr3L\tHiCExplorer\tboundary\t2387500\t2392500\t-0.072071\t.\t.\tID=B00488;delta=0.0427154736842;pvalue=0.600572469118;tad_sep=-0.072071\n-chr3L\tHiCExplorer\tboundary\t2457500\t2462500\t-0.09132325\t.\t.\tID=B00502;delta=0.0525483815789;pvalue=0.387641292676;tad_sep=-0.09132325\n-chr3L\tHiCExplorer\tboundary\t2557500\t2562500\t-0.09179675\t.\t.\tID=B00522;delta=0.0580647763158;pvalue=0.293724987027;tad_sep=-0.09179675\n-chr3L\tHiCExplorer\tboundary\t2597500\t'..b'ndary\t24882500\t24887500\t-0.09323725\t.\t.\tID=B23218;delta=0.0242850657895;pvalue=0.674283084976;tad_sep=-0.09323725\n-chr3R\tHiCExplorer\tboundary\t24992500\t24997500\t-0.0589785\t.\t.\tID=B23240;delta=0.0611537631579;pvalue=0.597622419247;tad_sep=-0.0589785\n-chr3R\tHiCExplorer\tboundary\t25087500\t25092500\t0.03674225\t.\t.\tID=B23259;delta=0.0342633947368;pvalue=0.98306528394;tad_sep=0.03674225\n-chr3R\tHiCExplorer\tboundary\t25162500\t25167500\t-0.0462465\t.\t.\tID=B23274;delta=0.0399657631579;pvalue=0.294701990791;tad_sep=-0.0462465\n-chr3R\tHiCExplorer\tboundary\t25327500\t25332500\t-0.08303325\t.\t.\tID=B23307;delta=0.0424824078947;pvalue=0.515089010427;tad_sep=-0.08303325\n-chr3R\tHiCExplorer\tboundary\t25402500\t25407500\t-0.00546225\t.\t.\tID=B23322;delta=0.0185628552632;pvalue=0.846835522646;tad_sep=-0.00546225\n-chr3R\tHiCExplorer\tboundary\t25567500\t25572500\t-0.04654075\t.\t.\tID=B23355;delta=0.0566089736842;pvalue=0.576192906383;tad_sep=-0.04654075\n-chr3R\tHiCExplorer\tboundary\t25577500\t25582500\t-0.01871575\t.\t.\tID=B23357;delta=0.0281310394737;pvalue=0.314699364851;tad_sep=-0.01871575\n-chr3R\tHiCExplorer\tboundary\t25727500\t25732500\t-0.00858875\t.\t.\tID=B23387;delta=0.0986943815789;pvalue=0.112031426493;tad_sep=-0.00858875\n-chr3R\tHiCExplorer\tboundary\t25877500\t25882500\t-0.10581625\t.\t.\tID=B23417;delta=0.0288810657895;pvalue=0.48806712443;tad_sep=-0.10581625\n-chr3R\tHiCExplorer\tboundary\t25987500\t25992500\t-0.090403\t.\t.\tID=B23439;delta=0.0182022894737;pvalue=0.952043612098;tad_sep=-0.090403\n-chr3R\tHiCExplorer\tboundary\t26047500\t26052500\t-0.0935315\t.\t.\tID=B23451;delta=0.0351577631579;pvalue=0.420309304718;tad_sep=-0.0935315\n-chr3R\tHiCExplorer\tboundary\t26177500\t26182500\t-0.11469275\t.\t.\tID=B23477;delta=0.0468813947368;pvalue=0.407773352255;tad_sep=-0.11469275\n-chr3R\tHiCExplorer\tboundary\t26272500\t26277500\t-0.1002735\t.\t.\tID=B23496;delta=0.0265311973684;pvalue=0.866273462912;tad_sep=-0.1002735\n-chr3R\tHiCExplorer\tboundary\t26327500\t26332500\t-0.092304\t.\t.\tID=B23507;delta=0.0340349736842;pvalue=0.801678295331;tad_sep=-0.092304\n-chr3R\tHiCExplorer\tboundary\t26487500\t26492500\t0.0627965\t.\t.\tID=B23539;delta=0.0261305394737;pvalue=0.917163037297;tad_sep=0.0627965\n-chr3R\tHiCExplorer\tboundary\t26562500\t26567500\t-0.01974475\t.\t.\tID=B23554;delta=0.0717252631579;pvalue=0.774996850942;tad_sep=-0.01974475\n-chr3R\tHiCExplorer\tboundary\t26637500\t26642500\t-0.07430725\t.\t.\tID=B23569;delta=0.0364784868421;pvalue=0.687771555077;tad_sep=-0.07430725\n-chr3R\tHiCExplorer\tboundary\t26712500\t26717500\t-0.049789\t.\t.\tID=B23584;delta=0.0413630789474;pvalue=0.926151939522;tad_sep=-0.049789\n-chr3R\tHiCExplorer\tboundary\t26867500\t26872500\t-0.0249905\t.\t.\tID=B23615;delta=0.0878640789474;pvalue=0.360644376149;tad_sep=-0.0249905\n-chr3R\tHiCExplorer\tboundary\t27042500\t27047500\t-0.074189\t.\t.\tID=B23650;delta=0.0714735131579;pvalue=0.596640534697;tad_sep=-0.074189\n-chr3R\tHiCExplorer\tboundary\t27152500\t27157500\t-0.00609925\t.\t.\tID=B23672;delta=0.0508306842105;pvalue=0.667062852012;tad_sep=-0.00609925\n-chr3R\tHiCExplorer\tboundary\t27182500\t27187500\t-0.01281025\t.\t.\tID=B23678;delta=0.0210053815789;pvalue=0.481433141582;tad_sep=-0.01281025\n-chr3R\tHiCExplorer\tboundary\t27247500\t27252500\t-0.04990275\t.\t.\tID=B23691;delta=0.0377629210526;pvalue=0.746434392485;tad_sep=-0.04990275\n-chr3R\tHiCExplorer\tboundary\t27382500\t27387500\t-0.041305\t.\t.\tID=B23718;delta=0.0604152368421;pvalue=0.443941047643;tad_sep=-0.041305\n-chr3R\tHiCExplorer\tboundary\t27417500\t27422500\t-0.0499295\t.\t.\tID=B23725;delta=0.040293;pvalue=0.772288553997;tad_sep=-0.0499295\n-chr3R\tHiCExplorer\tboundary\t27567500\t27572500\t-0.08094325\t.\t.\tID=B23755;delta=0.0899101052632;pvalue=0.377997904893;tad_sep=-0.08094325\n-chr3R\tHiCExplorer\tboundary\t27697500\t27702500\t-0.01535\t.\t.\tID=B23781;delta=0.0567128421053;pvalue=0.546627372724;tad_sep=-0.01535\n-chr3R\tHiCExplorer\tboundary\t27747500\t27752500\t0.01357725\t.\t.\tID=B23791;delta=0.0162098684211;pvalue=0.746434392485;tad_sep=0.01357725\n-chr3R\tHiCExplorer\tboundary\t27767500\t27772500\t0.0229625\t.\t.\tID=B23795;delta=0.0310075921053;pvalue=0.767420623706;tad_sep=0.0229625\n'
b
diff -r 38a612a120a8 -r dbf4afa03b00 test-data/find_TADs/multiNone_domains.bed
--- a/test-data/find_TADs/multiNone_domains.bed Fri Apr 27 03:31:20 2018 -0400
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
b
b'@@ -1,1403 +0,0 @@\n-chr3L\t165000\t260000\tID_0.01_1\t-0.10316675\t.\t165000\t260000\t31,120,180\n-chr3L\t260000\t335000\tID_0.01_2\t-0.026655\t.\t260000\t335000\t51,160,44\n-chr3L\t335000\t360000\tID_0.01_3\t-0.030848\t.\t335000\t360000\t31,120,180\n-chr3L\t360000\t485000\tID_0.01_4\t-0.0580815\t.\t360000\t485000\t51,160,44\n-chr3L\t485000\t525000\tID_0.01_5\t-0.07169775\t.\t485000\t525000\t31,120,180\n-chr3L\t525000\t680000\tID_0.01_6\t-0.1060405\t.\t525000\t680000\t51,160,44\n-chr3L\t680000\t705000\tID_0.01_7\t-0.0148855\t.\t680000\t705000\t31,120,180\n-chr3L\t705000\t740000\tID_0.01_8\t0.002784\t.\t705000\t740000\t51,160,44\n-chr3L\t740000\t870000\tID_0.01_9\t0.00949975\t.\t740000\t870000\t31,120,180\n-chr3L\t870000\t1010000\tID_0.01_10\t-0.09546975\t.\t870000\t1010000\t51,160,44\n-chr3L\t1010000\t1040000\tID_0.01_11\t-0.05182175\t.\t1010000\t1040000\t31,120,180\n-chr3L\t1040000\t1110000\tID_0.01_12\t-0.05874875\t.\t1040000\t1110000\t51,160,44\n-chr3L\t1110000\t1210000\tID_0.01_13\t-0.048349\t.\t1110000\t1210000\t31,120,180\n-chr3L\t1210000\t1245000\tID_0.01_14\t-0.0567565\t.\t1210000\t1245000\t51,160,44\n-chr3L\t1245000\t1300000\tID_0.01_15\t-0.0641435\t.\t1245000\t1300000\t31,120,180\n-chr3L\t1300000\t1465000\tID_0.01_16\t-0.091379\t.\t1300000\t1465000\t51,160,44\n-chr3L\t1465000\t1535000\tID_0.01_17\t-0.01307225\t.\t1465000\t1535000\t31,120,180\n-chr3L\t1535000\t1580000\tID_0.01_18\t-0.08711525\t.\t1535000\t1580000\t51,160,44\n-chr3L\t1580000\t1640000\tID_0.01_19\t-0.08235875\t.\t1580000\t1640000\t31,120,180\n-chr3L\t1640000\t1670000\tID_0.01_20\t-0.0628755\t.\t1640000\t1670000\t51,160,44\n-chr3L\t1670000\t1735000\tID_0.01_21\t-0.037945\t.\t1670000\t1735000\t31,120,180\n-chr3L\t1735000\t1815000\tID_0.01_22\t-0.050313\t.\t1735000\t1815000\t51,160,44\n-chr3L\t1815000\t1850000\tID_0.01_23\t-0.01723525\t.\t1815000\t1850000\t31,120,180\n-chr3L\t1850000\t1925000\tID_0.01_24\t-0.0259975\t.\t1850000\t1925000\t51,160,44\n-chr3L\t1925000\t2155000\tID_0.01_25\t8.325e-05\t.\t1925000\t2155000\t31,120,180\n-chr3L\t2155000\t2260000\tID_0.01_26\t-0.0401965\t.\t2155000\t2260000\t51,160,44\n-chr3L\t2260000\t2390000\tID_0.01_27\t-0.07518575\t.\t2260000\t2390000\t31,120,180\n-chr3L\t2390000\t2460000\tID_0.01_28\t-0.072071\t.\t2390000\t2460000\t51,160,44\n-chr3L\t2460000\t2560000\tID_0.01_29\t-0.09132325\t.\t2460000\t2560000\t31,120,180\n-chr3L\t2560000\t2600000\tID_0.01_30\t-0.09179675\t.\t2560000\t2600000\t51,160,44\n-chr3L\t2600000\t2740000\tID_0.01_31\t-0.0934855\t.\t2600000\t2740000\t31,120,180\n-chr3L\t2740000\t2885000\tID_0.01_32\t-0.08927875\t.\t2740000\t2885000\t51,160,44\n-chr3L\t2885000\t2945000\tID_0.01_33\t-0.08972575\t.\t2885000\t2945000\t31,120,180\n-chr3L\t2945000\t2960000\tID_0.01_34\t0.029899\t.\t2945000\t2960000\t51,160,44\n-chr3L\t2960000\t3045000\tID_0.01_35\t0.0356865\t.\t2960000\t3045000\t31,120,180\n-chr3L\t3045000\t3135000\tID_0.01_36\t-0.00466875\t.\t3045000\t3135000\t51,160,44\n-chr3L\t3135000\t3220000\tID_0.01_37\t0.055702\t.\t3135000\t3220000\t31,120,180\n-chr3L\t3220000\t3255000\tID_0.01_38\t-0.059463\t.\t3220000\t3255000\t51,160,44\n-chr3L\t3255000\t3315000\tID_0.01_39\t-0.045796\t.\t3255000\t3315000\t31,120,180\n-chr3L\t3315000\t3345000\tID_0.01_40\t-0.05499875\t.\t3315000\t3345000\t51,160,44\n-chr3L\t3345000\t3475000\tID_0.01_41\t-0.04234075\t.\t3345000\t3475000\t31,120,180\n-chr3L\t3475000\t3515000\tID_0.01_42\t-0.05097675\t.\t3475000\t3515000\t51,160,44\n-chr3L\t3515000\t3545000\tID_0.01_43\t-0.012488\t.\t3515000\t3545000\t31,120,180\n-chr3L\t3545000\t3615000\tID_0.01_44\t0.02457925\t.\t3545000\t3615000\t51,160,44\n-chr3L\t3615000\t3670000\tID_0.01_45\t0.019683\t.\t3615000\t3670000\t31,120,180\n-chr3L\t3670000\t3765000\tID_0.01_46\t0.09945325\t.\t3670000\t3765000\t51,160,44\n-chr3L\t3765000\t3785000\tID_0.01_47\t-0.047454\t.\t3765000\t3785000\t31,120,180\n-chr3L\t3785000\t3825000\tID_0.01_48\t-0.041084\t.\t3785000\t3825000\t51,160,44\n-chr3L\t3825000\t3900000\tID_0.01_49\t-0.06101175\t.\t3825000\t3900000\t31,120,180\n-chr3L\t3900000\t4000000\tID_0.01_50\t-0.0684535\t.\t3900000\t4000000\t51,160,44\n-chr3L\t4000000\t4120000\tID_0.01_51\t-0.03007875\t.\t4000000\t4120000\t31,120,180\n-chr3L\t4120000\t4165000\tID_0.01_52\t-0.0807515\t.\t4120000\t4165000\t51,160,44\n-chr3L\t4165000\t4200000\tID_0.01_53\t-0.088488\t.\t4165000\t4200000\t31,120,180\n-chr3L\t4200000\t4220000\tID_0.01_54\t-0.098724\t.\t4200000\t4220000\t51,160,44\n-chr3L\t4220000\t4270000\tID_0.01_55\t-0.088911\t.\t4220000\t4270000\t'..b'0\t31,120,180\n-chr3R\t22605000\t22695000\tID_0.01_1354\t-0.011252\t.\t22605000\t22695000\t51,160,44\n-chr3R\t22695000\t22780000\tID_0.01_1355\t-0.089033\t.\t22695000\t22780000\t31,120,180\n-chr3R\t22780000\t22885000\tID_0.01_1356\t-0.04050025\t.\t22780000\t22885000\t51,160,44\n-chr3R\t22885000\t22985000\tID_0.01_1357\t-0.05683475\t.\t22885000\t22985000\t31,120,180\n-chr3R\t22985000\t23110000\tID_0.01_1358\t-0.0237815\t.\t22985000\t23110000\t51,160,44\n-chr3R\t23110000\t23185000\tID_0.01_1359\t-0.100625\t.\t23110000\t23185000\t31,120,180\n-chr3R\t23185000\t23195000\tID_0.01_1360\t-0.00294725\t.\t23185000\t23195000\t51,160,44\n-chr3R\t23195000\t23415000\tID_0.01_1361\t-0.00275775\t.\t23195000\t23415000\t31,120,180\n-chr3R\t23415000\t23560000\tID_0.01_1362\t-0.090027\t.\t23415000\t23560000\t51,160,44\n-chr3R\t23560000\t23770000\tID_0.01_1363\t-0.104602\t.\t23560000\t23770000\t31,120,180\n-chr3R\t23770000\t23815000\tID_0.01_1364\t-0.1119105\t.\t23770000\t23815000\t51,160,44\n-chr3R\t23815000\t23920000\tID_0.01_1365\t-0.0660765\t.\t23815000\t23920000\t31,120,180\n-chr3R\t23920000\t24030000\tID_0.01_1366\t-0.04218475\t.\t23920000\t24030000\t51,160,44\n-chr3R\t24030000\t24160000\tID_0.01_1367\t-0.05579575\t.\t24030000\t24160000\t31,120,180\n-chr3R\t24160000\t24205000\tID_0.01_1368\t-0.01546725\t.\t24160000\t24205000\t51,160,44\n-chr3R\t24205000\t24345000\tID_0.01_1369\t-0.0326015\t.\t24205000\t24345000\t31,120,180\n-chr3R\t24345000\t24375000\tID_0.01_1370\t-0.0623065\t.\t24345000\t24375000\t51,160,44\n-chr3R\t24375000\t24450000\tID_0.01_1371\t-0.0749395\t.\t24375000\t24450000\t31,120,180\n-chr3R\t24450000\t24625000\tID_0.01_1372\t-0.09836075\t.\t24450000\t24625000\t51,160,44\n-chr3R\t24625000\t24745000\tID_0.01_1373\t-0.03171375\t.\t24625000\t24745000\t31,120,180\n-chr3R\t24745000\t24885000\tID_0.01_1374\t-0.08589625\t.\t24745000\t24885000\t51,160,44\n-chr3R\t24885000\t24995000\tID_0.01_1375\t-0.09323725\t.\t24885000\t24995000\t31,120,180\n-chr3R\t24995000\t25090000\tID_0.01_1376\t-0.0589785\t.\t24995000\t25090000\t51,160,44\n-chr3R\t25090000\t25165000\tID_0.01_1377\t0.03674225\t.\t25090000\t25165000\t31,120,180\n-chr3R\t25165000\t25330000\tID_0.01_1378\t-0.0462465\t.\t25165000\t25330000\t51,160,44\n-chr3R\t25330000\t25405000\tID_0.01_1379\t-0.08303325\t.\t25330000\t25405000\t31,120,180\n-chr3R\t25405000\t25570000\tID_0.01_1380\t-0.00546225\t.\t25405000\t25570000\t51,160,44\n-chr3R\t25570000\t25580000\tID_0.01_1381\t-0.04654075\t.\t25570000\t25580000\t31,120,180\n-chr3R\t25580000\t25730000\tID_0.01_1382\t-0.01871575\t.\t25580000\t25730000\t51,160,44\n-chr3R\t25730000\t25880000\tID_0.01_1383\t-0.00858875\t.\t25730000\t25880000\t31,120,180\n-chr3R\t25880000\t25990000\tID_0.01_1384\t-0.10581625\t.\t25880000\t25990000\t51,160,44\n-chr3R\t25990000\t26050000\tID_0.01_1385\t-0.090403\t.\t25990000\t26050000\t31,120,180\n-chr3R\t26050000\t26180000\tID_0.01_1386\t-0.0935315\t.\t26050000\t26180000\t51,160,44\n-chr3R\t26180000\t26275000\tID_0.01_1387\t-0.11469275\t.\t26180000\t26275000\t31,120,180\n-chr3R\t26275000\t26330000\tID_0.01_1388\t-0.1002735\t.\t26275000\t26330000\t51,160,44\n-chr3R\t26330000\t26490000\tID_0.01_1389\t-0.092304\t.\t26330000\t26490000\t31,120,180\n-chr3R\t26490000\t26565000\tID_0.01_1390\t0.0627965\t.\t26490000\t26565000\t51,160,44\n-chr3R\t26565000\t26640000\tID_0.01_1391\t-0.01974475\t.\t26565000\t26640000\t31,120,180\n-chr3R\t26640000\t26715000\tID_0.01_1392\t-0.07430725\t.\t26640000\t26715000\t51,160,44\n-chr3R\t26715000\t26870000\tID_0.01_1393\t-0.049789\t.\t26715000\t26870000\t31,120,180\n-chr3R\t26870000\t27045000\tID_0.01_1394\t-0.0249905\t.\t26870000\t27045000\t51,160,44\n-chr3R\t27045000\t27155000\tID_0.01_1395\t-0.074189\t.\t27045000\t27155000\t31,120,180\n-chr3R\t27155000\t27185000\tID_0.01_1396\t-0.00609925\t.\t27155000\t27185000\t51,160,44\n-chr3R\t27185000\t27250000\tID_0.01_1397\t-0.01281025\t.\t27185000\t27250000\t31,120,180\n-chr3R\t27250000\t27385000\tID_0.01_1398\t-0.04990275\t.\t27250000\t27385000\t51,160,44\n-chr3R\t27385000\t27420000\tID_0.01_1399\t-0.041305\t.\t27385000\t27420000\t31,120,180\n-chr3R\t27420000\t27570000\tID_0.01_1400\t-0.0499295\t.\t27420000\t27570000\t51,160,44\n-chr3R\t27570000\t27700000\tID_0.01_1401\t-0.08094325\t.\t27570000\t27700000\t31,120,180\n-chr3R\t27700000\t27750000\tID_0.01_1402\t-0.01535\t.\t27700000\t27750000\t51,160,44\n-chr3R\t27750000\t27770000\tID_0.01_1403\t0.01357725\t.\t27750000\t27770000\t31,120,180\n'
b
diff -r 38a612a120a8 -r dbf4afa03b00 test-data/find_TADs/multiNone_score.bedgraph
--- a/test-data/find_TADs/multiNone_score.bedgraph Fri Apr 27 03:31:20 2018 -0400
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
b
b'@@ -1,23814 +0,0 @@\n-chr2RHet\t2500\t3286880\t0.0\n-chr3RHet\t2500\t2516253\t0.0\n-chr2LHet\t2500\t366936\t0.0\n-chr4\t2500\t1350928\t0.0\n-chrYHet\t2500\t346019\t0.0\n-chr3L\t2500\t7500\t-0.15973725\n-chr3L\t7500\t12500\t-0.1550825\n-chr3L\t12500\t17500\t-0.1511685\n-chr3L\t17500\t22500\t-0.14787325\n-chr3L\t22500\t27500\t-0.14477275\n-chr3L\t27500\t32500\t-0.141869\n-chr3L\t32500\t37500\t-0.13920825\n-chr3L\t37500\t42500\t-0.13669525\n-chr3L\t42500\t47500\t-0.13435775\n-chr3L\t47500\t52500\t-0.13219825\n-chr3L\t52500\t57500\t-0.13013875\n-chr3L\t57500\t62500\t-0.09402375\n-chr3L\t62500\t67500\t-0.076427\n-chr3L\t67500\t72500\t-0.04183125\n-chr3L\t72500\t77500\t0.0197075\n-chr3L\t77500\t82500\t0.07052875\n-chr3L\t82500\t87500\t0.07283975\n-chr3L\t87500\t92500\t0.07045525\n-chr3L\t92500\t97500\t0.0683615\n-chr3L\t97500\t102500\t0.06999375\n-chr3L\t102500\t107500\t0.0683285\n-chr3L\t107500\t112500\t0.066853\n-chr3L\t112500\t117500\t0.06554\n-chr3L\t117500\t122500\t0.06436125\n-chr3L\t122500\t127500\t0.00960325\n-chr3L\t127500\t132500\t0.012285\n-chr3L\t132500\t137500\t-0.00142775\n-chr3L\t137500\t142500\t-0.060362\n-chr3L\t142500\t147500\t-0.05156225\n-chr3L\t147500\t152500\t-0.0552185\n-chr3L\t152500\t157500\t-0.06660375\n-chr3L\t157500\t162500\t-0.070088\n-chr3L\t162500\t167500\t-0.10316675\n-chr3L\t167500\t172500\t-0.10316675\n-chr3L\t172500\t177500\t-0.10316675\n-chr3L\t177500\t182500\t-0.089227\n-chr3L\t182500\t187500\t-0.0778915\n-chr3L\t187500\t192500\t-0.0547475\n-chr3L\t192500\t197500\t-0.06240725\n-chr3L\t197500\t202500\t-0.040267\n-chr3L\t202500\t207500\t-0.018089\n-chr3L\t207500\t212500\t-0.018089\n-chr3L\t212500\t217500\t-0.018089\n-chr3L\t217500\t222500\t0.0190635\n-chr3L\t222500\t227500\t0.01122225\n-chr3L\t227500\t232500\t-0.00338425\n-chr3L\t232500\t237500\t0.018671\n-chr3L\t237500\t242500\t0.015759\n-chr3L\t242500\t247500\t0.015759\n-chr3L\t247500\t252500\t-0.00807575\n-chr3L\t252500\t257500\t-0.01047525\n-chr3L\t257500\t262500\t-0.026655\n-chr3L\t262500\t267500\t-0.01461\n-chr3L\t267500\t272500\t-0.01739225\n-chr3L\t272500\t277500\t0.006616\n-chr3L\t277500\t282500\t0.02626725\n-chr3L\t282500\t287500\t0.02671675\n-chr3L\t287500\t292500\t0.04431375\n-chr3L\t292500\t297500\t0.075128\n-chr3L\t297500\t302500\t0.0517535\n-chr3L\t302500\t307500\t0.03498275\n-chr3L\t307500\t312500\t0.04280875\n-chr3L\t312500\t317500\t-0.00566075\n-chr3L\t317500\t322500\t-0.00566075\n-chr3L\t322500\t327500\t-0.01699625\n-chr3L\t327500\t332500\t0.0001575\n-chr3L\t332500\t337500\t-0.030848\n-chr3L\t337500\t342500\t-0.02264125\n-chr3L\t342500\t347500\t-0.01607175\n-chr3L\t347500\t352500\t-0.03003825\n-chr3L\t352500\t357500\t-0.0029145\n-chr3L\t357500\t362500\t-0.0580815\n-chr3L\t362500\t367500\t-0.042338\n-chr3L\t367500\t372500\t-0.0243195\n-chr3L\t372500\t377500\t-0.0233235\n-chr3L\t377500\t382500\t0.01665375\n-chr3L\t382500\t387500\t0.01665375\n-chr3L\t387500\t392500\t0.030134\n-chr3L\t392500\t397500\t0.01966325\n-chr3L\t397500\t402500\t0.0270555\n-chr3L\t402500\t407500\t0.03715275\n-chr3L\t407500\t412500\t0.03215025\n-chr3L\t412500\t417500\t0.007102\n-chr3L\t417500\t422500\t0.01531925\n-chr3L\t422500\t427500\t0.04944275\n-chr3L\t427500\t432500\t0.017395\n-chr3L\t432500\t437500\t0.0233485\n-chr3L\t437500\t442500\t0.010935\n-chr3L\t442500\t447500\t0.015241\n-chr3L\t447500\t452500\t-0.00172725\n-chr3L\t452500\t457500\t-0.006215\n-chr3L\t457500\t462500\t-0.0121685\n-chr3L\t462500\t467500\t-0.0042425\n-chr3L\t467500\t472500\t0.00083775\n-chr3L\t472500\t477500\t-0.02013475\n-chr3L\t477500\t482500\t-0.058266\n-chr3L\t482500\t487500\t-0.07169775\n-chr3L\t487500\t492500\t-0.04601075\n-chr3L\t492500\t497500\t-0.02333825\n-chr3L\t497500\t502500\t-0.00838725\n-chr3L\t502500\t507500\t-0.0641845\n-chr3L\t507500\t512500\t-0.067458\n-chr3L\t512500\t517500\t-0.067458\n-chr3L\t517500\t522500\t-0.09926975\n-chr3L\t522500\t527500\t-0.1060405\n-chr3L\t527500\t532500\t-0.07751675\n-chr3L\t532500\t537500\t-0.07751675\n-chr3L\t537500\t542500\t-0.07751675\n-chr3L\t542500\t547500\t-0.06945475\n-chr3L\t547500\t552500\t-0.06322125\n-chr3L\t552500\t557500\t0.00947925\n-chr3L\t557500\t562500\t-0.02586475\n-chr3L\t562500\t567500\t0.030247\n-chr3L\t567500\t572500\t0.04485875\n-chr3L\t572500\t577500\t0.0579985\n-chr3L\t577500\t582500\t0.085449\n-chr3L\t582500\t587500\t0.10347075\n-chr3L\t587500\t592500\t0.1197795\n-chr3L\t592500\t597500\t0.115187\n-chr3L\t597500\t602500\t0.099483\n-chr3L\t602500\t607500\t0.100333\n-chr3L\t607500\t612500\t0.1935635\n-chr3L\t612500\t6'..b'52500\t27357500\t0.02843225\n-chr3R\t27357500\t27362500\t0.003006\n-chr3R\t27362500\t27367500\t0.02624575\n-chr3R\t27367500\t27372500\t0.01185675\n-chr3R\t27372500\t27377500\t0.0101145\n-chr3R\t27377500\t27382500\t-0.005061\n-chr3R\t27382500\t27387500\t-0.041305\n-chr3R\t27387500\t27392500\t-0.00143125\n-chr3R\t27392500\t27397500\t0.04561275\n-chr3R\t27397500\t27402500\t0.02985575\n-chr3R\t27402500\t27407500\t0.0173185\n-chr3R\t27407500\t27412500\t0.0272775\n-chr3R\t27412500\t27417500\t0.01093175\n-chr3R\t27417500\t27422500\t-0.0499295\n-chr3R\t27422500\t27427500\t-0.04139125\n-chr3R\t27427500\t27432500\t-0.0366555\n-chr3R\t27432500\t27437500\t-0.0366555\n-chr3R\t27437500\t27442500\t-0.04748775\n-chr3R\t27442500\t27447500\t-0.05511025\n-chr3R\t27447500\t27452500\t-0.05736225\n-chr3R\t27452500\t27457500\t-0.0233205\n-chr3R\t27457500\t27462500\t-0.0020265\n-chr3R\t27462500\t27467500\t0.02501975\n-chr3R\t27467500\t27472500\t0.036331\n-chr3R\t27472500\t27477500\t0.036331\n-chr3R\t27477500\t27482500\t0.036331\n-chr3R\t27482500\t27487500\t0.06726625\n-chr3R\t27487500\t27492500\t0.06726625\n-chr3R\t27492500\t27497500\t0.0926245\n-chr3R\t27497500\t27502500\t0.098145\n-chr3R\t27502500\t27507500\t0.088452\n-chr3R\t27507500\t27512500\t0.0991195\n-chr3R\t27512500\t27517500\t0.07477075\n-chr3R\t27517500\t27522500\t0.07477075\n-chr3R\t27522500\t27527500\t0.07477075\n-chr3R\t27527500\t27532500\t0.07477075\n-chr3R\t27532500\t27537500\t0.07667425\n-chr3R\t27537500\t27542500\t0.08198875\n-chr3R\t27542500\t27547500\t0.068792\n-chr3R\t27547500\t27552500\t0.00660575\n-chr3R\t27552500\t27557500\t-0.06866275\n-chr3R\t27557500\t27562500\t-0.063076\n-chr3R\t27562500\t27567500\t-0.063076\n-chr3R\t27567500\t27572500\t-0.08094325\n-chr3R\t27572500\t27577500\t-0.07177225\n-chr3R\t27577500\t27582500\t0.00014175\n-chr3R\t27582500\t27587500\t-0.004425\n-chr3R\t27587500\t27592500\t-0.0055905\n-chr3R\t27592500\t27597500\t0.0107725\n-chr3R\t27597500\t27602500\t0.012076\n-chr3R\t27602500\t27607500\t0.00204375\n-chr3R\t27607500\t27612500\t0.01391525\n-chr3R\t27612500\t27617500\t0.02616875\n-chr3R\t27617500\t27622500\t0.02862975\n-chr3R\t27622500\t27627500\t0.02862975\n-chr3R\t27627500\t27632500\t0.03521625\n-chr3R\t27632500\t27637500\t0.00040125\n-chr3R\t27637500\t27642500\t0.0303095\n-chr3R\t27642500\t27647500\t0.090842\n-chr3R\t27647500\t27652500\t0.10491025\n-chr3R\t27652500\t27657500\t0.11880175\n-chr3R\t27657500\t27662500\t0.09649925\n-chr3R\t27662500\t27667500\t0.07636225\n-chr3R\t27667500\t27672500\t0.06380525\n-chr3R\t27672500\t27677500\t0.04760175\n-chr3R\t27677500\t27682500\t0.02274975\n-chr3R\t27682500\t27687500\t0.015637\n-chr3R\t27687500\t27692500\t0.015637\n-chr3R\t27692500\t27697500\t0.025063\n-chr3R\t27697500\t27702500\t-0.01535\n-chr3R\t27702500\t27707500\t-0.01535\n-chr3R\t27707500\t27712500\t0.00155075\n-chr3R\t27712500\t27717500\t0.006288\n-chr3R\t27717500\t27722500\t0.006288\n-chr3R\t27722500\t27727500\t-0.00858325\n-chr3R\t27727500\t27732500\t0.02622075\n-chr3R\t27732500\t27737500\t0.097312\n-chr3R\t27737500\t27742500\t0.067952\n-chr3R\t27742500\t27747500\t0.0387865\n-chr3R\t27747500\t27752500\t0.01357725\n-chr3R\t27752500\t27757500\t0.02531675\n-chr3R\t27757500\t27762500\t0.033303\n-chr3R\t27762500\t27767500\t0.050386\n-chr3R\t27767500\t27772500\t0.0229625\n-chr3R\t27772500\t27777500\t0.04058825\n-chr3R\t27777500\t27782500\t0.03747975\n-chr3R\t27782500\t27787500\t0.0294565\n-chr3R\t27787500\t27792500\t0.07453225\n-chr3R\t27792500\t27797500\t0.08362425\n-chr3R\t27797500\t27802500\t0.06882\n-chr3R\t27802500\t27807500\t0.075945\n-chr3R\t27807500\t27812500\t0.11806575\n-chr3R\t27812500\t27817500\t0.152855\n-chr3R\t27817500\t27822500\t0.1721425\n-chr3R\t27822500\t27827500\t0.17090925\n-chr3R\t27827500\t27832500\t0.15466375\n-chr3R\t27832500\t27837500\t0.1765955\n-chr3R\t27837500\t27842500\t0.16170225\n-chr3R\t27842500\t27847500\t0.16431675\n-chr3R\t27847500\t27852500\t0.20353925\n-chr3R\t27852500\t27857500\t0.19259975\n-chr3R\t27857500\t27862500\t0.13903775\n-chr3R\t27862500\t27867500\t0.1658075\n-chr3R\t27867500\t27872500\t0.033584\n-chr3R\t27872500\t27877500\t-0.044813\n-chr3R\t27877500\t27882500\t-0.1079445\n-chr3R\t27882500\t27887500\t-0.1024605\n-chr3R\t27887500\t27892500\t-0.09179375\n-chr3R\t27892500\t27897500\t-0.1533095\n-chr3R\t27897500\t27902500\t-0.15876925\n-chr3R\t27902500\t27905026\t0.0\n-chrUextra\t2500\t29002328\t0.0\n-chrM\t2500\t17258\t0.0\n-chr3LHet\t2500\t2555245\t0.0\n'
b
diff -r 38a612a120a8 -r dbf4afa03b00 test-data/find_TADs/multiNone_tad_score.bm
--- a/test-data/find_TADs/multiNone_tad_score.bm Fri Apr 27 03:31:20 2018 -0400
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
b
b'@@ -1,23830 +0,0 @@\n-#{"step":20000,"minDepth":60000,"maxDepth":180000,"binsize":5000}\n-chr2RHet\t0\t5000\t0.000000\t0.000000\t0.000000\t0.000000\n-chr2RHet\t3285000\t3288761\t0.000000\t0.000000\t0.000000\t0.000000\n-chr3RHet\t0\t5000\t0.000000\t0.000000\t0.000000\t0.000000\n-chr3RHet\t2515000\t2517507\t0.000000\t0.000000\t0.000000\t0.000000\n-chr2LHet\t0\t5000\t0.000000\t0.000000\t0.000000\t0.000000\n-chr2LHet\t365000\t368872\t0.000000\t0.000000\t0.000000\t0.000000\n-chr4\t0\t5000\t0.000000\t0.000000\t0.000000\t0.000000\n-chr4\t1350000\t1351857\t0.000000\t0.000000\t0.000000\t0.000000\n-chrYHet\t0\t5000\t0.000000\t0.000000\t0.000000\t0.000000\n-chrYHet\t345000\t347038\t0.000000\t0.000000\t0.000000\t0.000000\n-chr3L\t0\t5000\t0.000000\t0.000000\t0.000000\t0.000000\n-chr3L\t5000\t10000\t-0.185185\t-0.171295\t-0.149986\t-0.132483\n-chr3L\t10000\t15000\t-0.179233\t-0.165874\t-0.145865\t-0.129358\n-chr3L\t15000\t20000\t-0.174239\t-0.161260\t-0.142558\t-0.126617\n-chr3L\t20000\t25000\t-0.170014\t-0.157559\t-0.139686\t-0.124234\n-chr3L\t25000\t30000\t-0.165979\t-0.154152\t-0.136908\t-0.122052\n-chr3L\t30000\t35000\t-0.162203\t-0.150978\t-0.134318\t-0.119977\n-chr3L\t35000\t40000\t-0.158727\t-0.148088\t-0.131965\t-0.118053\n-chr3L\t40000\t45000\t-0.155567\t-0.145272\t-0.129738\t-0.116204\n-chr3L\t45000\t50000\t-0.152607\t-0.142713\t-0.127607\t-0.114504\n-chr3L\t50000\t55000\t-0.149926\t-0.140331\t-0.125612\t-0.112924\n-chr3L\t55000\t60000\t-0.147348\t-0.138093\t-0.123706\t-0.111408\n-chr3L\t60000\t65000\t-0.092610\t-0.096797\t-0.095758\t-0.090930\n-chr3L\t65000\t70000\t-0.063836\t-0.077794\t-0.082758\t-0.081320\n-chr3L\t70000\t75000\t-0.063836\t-0.013812\t-0.039782\t-0.049895\n-chr3L\t75000\t80000\t0.022439\t0.060152\t0.009858\t-0.013619\n-chr3L\t80000\t85000\t0.152571\t0.093803\t0.032622\t0.003119\n-chr3L\t85000\t90000\t0.214709\t0.074296\t0.013186\t-0.010832\n-chr3L\t90000\t95000\t0.214709\t0.074296\t0.007552\t-0.014736\n-chr3L\t95000\t100000\t0.214709\t0.074296\t0.002590\t-0.018149\n-chr3L\t100000\t105000\t0.221372\t0.078043\t0.000227\t-0.019667\n-chr3L\t105000\t110000\t0.221372\t0.078043\t-0.003723\t-0.022378\n-chr3L\t110000\t115000\t0.221372\t0.078043\t-0.007240\t-0.024763\n-chr3L\t115000\t120000\t0.221372\t0.078043\t-0.010366\t-0.026889\n-chr3L\t120000\t125000\t0.221372\t0.078043\t-0.013170\t-0.028800\n-chr3L\t125000\t130000\t0.111997\t0.016520\t-0.040513\t-0.049591\n-chr3L\t130000\t135000\t0.067050\t0.048925\t-0.026111\t-0.040724\n-chr3L\t135000\t140000\t0.016687\t0.046933\t-0.026996\t-0.042335\n-chr3L\t140000\t145000\t-0.076765\t-0.035198\t-0.063499\t-0.065986\n-chr3L\t145000\t150000\t-0.022697\t-0.059245\t-0.060247\t-0.064060\n-chr3L\t150000\t155000\t-0.030134\t-0.063428\t-0.062106\t-0.065206\n-chr3L\t155000\t160000\t-0.053449\t-0.076543\t-0.067935\t-0.068488\n-chr3L\t160000\t165000\t-0.076765\t-0.058294\t-0.073764\t-0.071529\n-chr3L\t165000\t170000\t-0.144931\t-0.096638\t-0.090806\t-0.080292\n-chr3L\t170000\t175000\t-0.144931\t-0.096638\t-0.090806\t-0.080292\n-chr3L\t175000\t180000\t-0.144931\t-0.096638\t-0.090806\t-0.080292\n-chr3L\t180000\t185000\t-0.089172\t-0.096638\t-0.090806\t-0.080292\n-chr3L\t185000\t190000\t-0.065857\t-0.083523\t-0.084977\t-0.077209\n-chr3L\t190000\t195000\t-0.042541\t-0.042285\t-0.066649\t-0.067515\n-chr3L\t195000\t200000\t-0.065857\t-0.055399\t-0.072477\t-0.055896\n-chr3L\t200000\t205000\t-0.051757\t-0.011064\t-0.052773\t-0.045474\n-chr3L\t205000\t210000\t-0.014382\t0.013201\t-0.041989\t-0.029186\n-chr3L\t210000\t215000\t-0.014382\t0.013201\t-0.041989\t-0.029186\n-chr3L\t215000\t220000\t-0.014382\t0.013201\t-0.041989\t-0.029186\n-chr3L\t220000\t225000\t0.093474\t0.037466\t-0.031204\t-0.023482\n-chr3L\t225000\t230000\t0.093474\t0.006101\t-0.031204\t-0.023482\n-chr3L\t230000\t235000\t0.056060\t-0.014945\t-0.040558\t-0.014094\n-chr3L\t235000\t240000\t0.108983\t0.014825\t-0.027327\t-0.021797\n-chr3L\t240000\t245000\t0.079375\t0.026294\t-0.016159\t-0.026474\n-chr3L\t245000\t250000\t0.079375\t0.026294\t-0.016159\t-0.026474\n-chr3L\t250000\t255000\t0.006063\t0.013179\t-0.021988\t-0.029557\n-chr3L\t255000\t260000\t0.012922\t-0.011086\t-0.016881\t-0.026856\n-chr3L\t260000\t265000\t-0.051797\t-0.011086\t-0.016881\t-0.026856\n-chr3L\t265000\t270000\t-0.002735\t-0.011612\t-0.017114\t-0.026979\n-chr3L\t270000\t275000\t-0.008457\t-0.014831\t-0.018545\t-0.027736\n-chr3L\t275000\t280000\t0.040924\t0.012946\t-0.006200\t-0.021206\n-chr3L\t280000\t285000\t0.043057\t0.0848'..b'867\n-chr3R\t27615000\t27620000\t0.096590\t0.009047\t-0.006829\t0.005867\n-chr3R\t27620000\t27625000\t0.088048\t0.036259\t-0.012602\t0.002814\n-chr3R\t27625000\t27630000\t0.088048\t0.036259\t-0.012602\t0.002814\n-chr3R\t27630000\t27635000\t0.088048\t0.036259\t0.004630\t0.011928\n-chr3R\t27635000\t27640000\t0.016439\t-0.004021\t-0.013272\t0.002459\n-chr3R\t27640000\t27645000\t0.067730\t0.028353\t0.001116\t0.024039\n-chr3R\t27645000\t27650000\t0.192236\t0.098387\t0.032243\t0.040502\n-chr3R\t27650000\t27655000\t0.221172\t0.114663\t0.039477\t0.044329\n-chr3R\t27655000\t27660000\t0.221172\t0.157286\t0.039477\t0.057272\n-chr3R\t27660000\t27665000\t0.169178\t0.121746\t0.039477\t0.055596\n-chr3R\t27665000\t27670000\t0.105701\t0.086040\t0.038175\t0.075533\n-chr3R\t27670000\t27675000\t0.056946\t0.097388\t0.030236\t0.070651\n-chr3R\t27675000\t27680000\t0.056946\t0.068141\t0.017238\t0.048082\n-chr3R\t27680000\t27685000\t-0.038675\t0.079148\t0.007562\t0.042964\n-chr3R\t27685000\t27690000\t-0.044280\t0.033373\t0.024916\t0.048539\n-chr3R\t27690000\t27695000\t-0.044280\t0.033373\t0.024916\t0.048539\n-chr3R\t27695000\t27700000\t-0.044280\t0.033373\t0.062620\t0.048539\n-chr3R\t27700000\t27705000\t-0.084029\t-0.053780\t0.048357\t0.028052\n-chr3R\t27705000\t27710000\t-0.084029\t-0.053780\t0.048357\t0.028052\n-chr3R\t27710000\t27715000\t-0.045339\t-0.025686\t0.058030\t0.019198\n-chr3R\t27715000\t27720000\t-0.045339\t-0.025686\t0.076979\t0.019198\n-chr3R\t27720000\t27725000\t-0.045339\t-0.025686\t0.076979\t0.019198\n-chr3R\t27725000\t27730000\t-0.103607\t0.016512\t0.033564\t0.019198\n-chr3R\t27730000\t27735000\t-0.050204\t0.046552\t0.068839\t0.039696\n-chr3R\t27735000\t27740000\t0.046239\t0.185635\t0.092949\t0.064425\n-chr3R\t27740000\t27745000\t0.007548\t0.121674\t0.083277\t0.059309\n-chr3R\t27745000\t27750000\t0.007548\t0.001158\t0.083277\t0.063163\n-chr3R\t27750000\t27755000\t-0.026993\t-0.060469\t0.078472\t0.063299\n-chr3R\t27755000\t27760000\t-0.026993\t-0.017832\t0.078472\t0.067620\n-chr3R\t27760000\t27765000\t-0.001206\t-0.003327\t0.070352\t0.067393\n-chr3R\t27765000\t27770000\t0.037229\t-0.024344\t0.098718\t0.089941\n-chr3R\t27770000\t27775000\t-0.027695\t-0.060863\t0.099720\t0.080688\n-chr3R\t27775000\t27780000\t-0.027695\t-0.060863\t0.164400\t0.086511\n-chr3R\t27780000\t27785000\t-0.027695\t-0.060863\t0.145646\t0.092831\n-chr3R\t27785000\t27790000\t-0.027695\t-0.060863\t0.106650\t0.099734\n-chr3R\t27790000\t27795000\t0.039961\t0.063357\t0.089896\t0.104915\n-chr3R\t27795000\t27800000\t0.021098\t0.084764\t0.107981\t0.120654\n-chr3R\t27800000\t27805000\t-0.037165\t0.094196\t0.100334\t0.117915\n-chr3R\t27805000\t27810000\t-0.027092\t0.130175\t0.075438\t0.125259\n-chr3R\t27810000\t27815000\t0.108330\t0.137264\t0.087805\t0.138864\n-chr3R\t27815000\t27820000\t0.213050\t0.158958\t0.113384\t0.126028\n-chr3R\t27820000\t27825000\t0.278008\t0.153292\t0.121643\t0.135627\n-chr3R\t27825000\t27830000\t0.222549\t0.164302\t0.142172\t0.154614\n-chr3R\t27830000\t27835000\t0.153621\t0.136752\t0.157731\t0.170551\n-chr3R\t27835000\t27840000\t0.189472\t0.176743\t0.191033\t0.149134\n-chr3R\t27840000\t27845000\t0.140679\t0.164483\t0.190586\t0.151061\n-chr3R\t27845000\t27850000\t0.140679\t0.130683\t0.214692\t0.171213\n-chr3R\t27850000\t27855000\t0.223557\t0.140759\t0.273233\t0.176608\n-chr3R\t27855000\t27860000\t0.189488\t0.166013\t0.211109\t0.203789\n-chr3R\t27860000\t27865000\t0.090674\t0.097172\t0.179576\t0.188729\n-chr3R\t27865000\t27870000\t0.060550\t0.141907\t0.227388\t0.233385\n-chr3R\t27870000\t27875000\t-0.035456\t0.017860\t0.044535\t0.107397\n-chr3R\t27875000\t27880000\t-0.107824\t-0.110119\t-0.030346\t0.069037\n-chr3R\t27880000\t27885000\t-0.162785\t-0.151946\t-0.133607\t0.016560\n-chr3R\t27885000\t27890000\t-0.166657\t-0.155451\t-0.136374\t0.048640\n-chr3R\t27890000\t27895000\t-0.171304\t-0.159528\t-0.139673\t0.103330\n-chr3R\t27895000\t27900000\t-0.177135\t-0.164497\t-0.143549\t-0.128057\n-chr3R\t27900000\t27905000\t-0.184873\t-0.170507\t-0.148271\t-0.131426\n-chr3R\t27905000\t27905053\t0.000000\t0.000000\t0.000000\t0.000000\n-chrUextra\t0\t5000\t0.000000\t0.000000\t0.000000\t0.000000\n-chrUextra\t29000000\t29004656\t0.000000\t0.000000\t0.000000\t0.000000\n-chrM\t0\t5000\t0.000000\t0.000000\t0.000000\t0.000000\n-chrM\t15000\t19517\t0.000000\t0.000000\t0.000000\t0.000000\n-chr3LHet\t0\t5000\t0.000000\t0.000000\t0.000000\t0.000000\n-chr3LHet\t2555000\t2555491\t0.000000\t0.000000\t0.000000\t0.000000\n'
b
diff -r 38a612a120a8 -r dbf4afa03b00 test-data/find_TADs/multiNone_zscore_matrix.h5
b
Binary file test-data/find_TADs/multiNone_zscore_matrix.h5 has changed
b
diff -r 38a612a120a8 -r dbf4afa03b00 test-data/hicBuildMatrix_result1.bam
b
Binary file test-data/hicBuildMatrix_result1.bam has changed
b
diff -r 38a612a120a8 -r dbf4afa03b00 test-data/merged_matrix.npz.h5
b
Binary file test-data/merged_matrix.npz.h5 has changed
b
diff -r 38a612a120a8 -r dbf4afa03b00 test-data/multiFDR_boundaries.bed
--- a/test-data/multiFDR_boundaries.bed Fri Apr 27 03:31:20 2018 -0400
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
b
@@ -1,2 +0,0 @@
-chr2L 22922500 22927500 B04585 -0.068256362891 .
-chrX 87500 92500 B19358 -0.072020401017 .
b
diff -r 38a612a120a8 -r dbf4afa03b00 test-data/multiFDR_boundaries.gff
--- a/test-data/multiFDR_boundaries.gff Fri Apr 27 03:31:20 2018 -0400
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
b
@@ -1,2 +0,0 @@
-chr2L HiCExplorer boundary 22922500 22927500 -0.068256362891 . . ID=B04585;delta=0.021954846720;pvalue=0.000033964776;tad_sep=-0.068256362891
-chrX HiCExplorer boundary 87500 92500 -0.072020401017 . . ID=B19358;delta=0.019799980104;pvalue=0.000055223433;tad_sep=-0.072020401017
b
diff -r 38a612a120a8 -r dbf4afa03b00 test-data/multiFDR_score.bedgraph
--- a/test-data/multiFDR_score.bedgraph Fri Apr 27 03:31:20 2018 -0400
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
b
b'@@ -1,23814 +0,0 @@\n-chr2L\t2500\t7500\t-0.164488846397\n-chr2L\t7500\t12500\t0.004155516280\n-chr2L\t12500\t17500\t0.260509497302\n-chr2L\t17500\t22500\t0.126728724578\n-chr2L\t22500\t27500\t0.107536542495\n-chr2L\t27500\t32500\t0.067996441287\n-chr2L\t32500\t37500\t0.180067325085\n-chr2L\t37500\t42500\t0.188704045555\n-chr2L\t42500\t47500\t0.123071283383\n-chr2L\t47500\t52500\t0.090946822420\n-chr2L\t52500\t57500\t0.050290136708\n-chr2L\t57500\t62500\t0.043738171585\n-chr2L\t62500\t67500\t0.036458137676\n-chr2L\t67500\t72500\t-0.008311665224\n-chr2L\t72500\t77500\t-0.025506335364\n-chr2L\t77500\t82500\t-0.028782499450\n-chr2L\t82500\t87500\t-0.008859983289\n-chr2L\t87500\t92500\t0.012581289189\n-chr2L\t92500\t97500\t-0.026656341295\n-chr2L\t97500\t102500\t-0.064470557052\n-chr2L\t102500\t107500\t-0.022699733707\n-chr2L\t107500\t112500\t-0.026264267296\n-chr2L\t112500\t117500\t-0.009926677809\n-chr2L\t117500\t122500\t-0.006876513913\n-chr2L\t122500\t127500\t0.016147318959\n-chr2L\t127500\t132500\t0.022378914981\n-chr2L\t132500\t137500\t0.070952047599\n-chr2L\t137500\t142500\t0.071053469305\n-chr2L\t142500\t147500\t0.068034199638\n-chr2L\t147500\t152500\t0.067090397637\n-chr2L\t152500\t157500\t0.057311311696\n-chr2L\t157500\t162500\t0.067610279560\n-chr2L\t162500\t167500\t0.029002777185\n-chr2L\t167500\t172500\t0.029002777185\n-chr2L\t172500\t177500\t0.008980247068\n-chr2L\t177500\t182500\t0.016907224460\n-chr2L\t182500\t187500\t-0.000150569937\n-chr2L\t187500\t192500\t0.010495785312\n-chr2L\t192500\t197500\t-0.048163268016\n-chr2L\t197500\t202500\t-0.039867994837\n-chr2L\t202500\t207500\t-0.046910414090\n-chr2L\t207500\t212500\t-0.055696730183\n-chr2L\t212500\t217500\t-0.036501614110\n-chr2L\t217500\t222500\t-0.036501614110\n-chr2L\t222500\t227500\t-0.023335648652\n-chr2L\t227500\t232500\t-0.023335648652\n-chr2L\t232500\t237500\t-0.038011760274\n-chr2L\t237500\t242500\t-0.040574053585\n-chr2L\t242500\t247500\t-0.052320501930\n-chr2L\t247500\t252500\t-0.065486467388\n-chr2L\t252500\t257500\t-0.053000848584\n-chr2L\t257500\t262500\t-0.053000848584\n-chr2L\t262500\t267500\t-0.022469370040\n-chr2L\t267500\t272500\t-0.038170498789\n-chr2L\t272500\t277500\t-0.059012201761\n-chr2L\t277500\t282500\t-0.086006441495\n-chr2L\t282500\t287500\t-0.053031533287\n-chr2L\t287500\t292500\t-0.053031533287\n-chr2L\t292500\t297500\t-0.083051915395\n-chr2L\t297500\t302500\t-0.083051915395\n-chr2L\t302500\t307500\t-0.051758175573\n-chr2L\t307500\t312500\t-0.044639541179\n-chr2L\t312500\t317500\t-0.043712800180\n-chr2L\t317500\t322500\t-0.019156222003\n-chr2L\t322500\t327500\t-0.017442079268\n-chr2L\t327500\t332500\t0.041070352715\n-chr2L\t332500\t337500\t0.049256940562\n-chr2L\t337500\t342500\t0.053147123147\n-chr2L\t342500\t347500\t0.053147123147\n-chr2L\t347500\t352500\t0.078905602777\n-chr2L\t352500\t357500\t0.093459536727\n-chr2L\t357500\t362500\t0.079684892703\n-chr2L\t362500\t367500\t0.063143859889\n-chr2L\t367500\t372500\t0.092016050812\n-chr2L\t372500\t377500\t0.061075544744\n-chr2L\t377500\t382500\t0.013498603323\n-chr2L\t382500\t387500\t0.029781933737\n-chr2L\t387500\t392500\t-0.021388944213\n-chr2L\t392500\t397500\t-0.038792978876\n-chr2L\t397500\t402500\t-0.050263472402\n-chr2L\t402500\t407500\t-0.044321193230\n-chr2L\t407500\t412500\t-0.007732343879\n-chr2L\t412500\t417500\t-0.013295314500\n-chr2L\t417500\t422500\t-0.013295314500\n-chr2L\t422500\t427500\t-0.021132388853\n-chr2L\t427500\t432500\t-0.021015012893\n-chr2L\t432500\t437500\t-0.015982567418\n-chr2L\t437500\t442500\t-0.049145302596\n-chr2L\t442500\t447500\t-0.064964420946\n-chr2L\t447500\t452500\t-0.051664858126\n-chr2L\t452500\t457500\t-0.071914886809\n-chr2L\t457500\t462500\t-0.069724393991\n-chr2L\t462500\t467500\t-0.069724393991\n-chr2L\t467500\t472500\t-0.059605045512\n-chr2L\t472500\t477500\t-0.051309772332\n-chr2L\t477500\t482500\t-0.048373705573\n-chr2L\t482500\t487500\t-0.048373705573\n-chr2L\t487500\t492500\t-0.014227247533\n-chr2L\t492500\t497500\t-0.064541001831\n-chr2L\t497500\t502500\t-0.064541001831\n-chr2L\t502500\t507500\t-0.056245728652\n-chr2L\t507500\t512500\t-0.064541001831\n-chr2L\t512500\t517500\t-0.071946857401\n-chr2L\t517500\t522500\t-0.071946857401\n-chr2L\t522500\t527500\t-0.071946857401\n-chr2L\t527500\t532500\t-0.076979302876\n-chr2L\t532500\t537500\t-0.076979302876\n-chr2L\t537500\t542500\t-0.076979302876\n-chr2L\t542500\t547500\t-0.120135452320\n-chr2L\t547500\t552500\t-0.10'..b'873550\n-chrX\t21922500\t21927500\t-0.021312400735\n-chrX\t21927500\t21932500\t-0.057645152033\n-chrX\t21932500\t21937500\t-0.057645152033\n-chrX\t21937500\t21942500\t-0.036897150779\n-chrX\t21942500\t21947500\t-0.036897150779\n-chrX\t21947500\t21952500\t-0.036897150779\n-chrX\t21952500\t21957500\t-0.053223675458\n-chrX\t21957500\t21962500\t-0.012125141728\n-chrX\t21962500\t21967500\t0.014172905654\n-chrX\t21967500\t21972500\t0.014172905654\n-chrX\t21972500\t21977500\t0.014172905654\n-chrX\t21977500\t21982500\t-0.008400059504\n-chrX\t21982500\t21987500\t0.007215527835\n-chrX\t21987500\t21992500\t0.014258261416\n-chrX\t21992500\t21997500\t0.007002028225\n-chrX\t21997500\t22002500\t0.007002028225\n-chrX\t22002500\t22007500\t0.007002028225\n-chrX\t22007500\t22012500\t0.007002028225\n-chrX\t22012500\t22017500\t0.008342793298\n-chrX\t22017500\t22022500\t-0.027906452100\n-chrX\t22022500\t22027500\t-0.011579927421\n-chrX\t22027500\t22032500\t0.018541128313\n-chrX\t22032500\t22037500\t0.060917271058\n-chrX\t22037500\t22042500\t0.096648799655\n-chrX\t22042500\t22047500\t0.101910874976\n-chrX\t22047500\t22052500\t0.171651092137\n-chrX\t22052500\t22057500\t0.155429497270\n-chrX\t22057500\t22062500\t0.164581916727\n-chrX\t22062500\t22067500\t0.173227480473\n-chrX\t22067500\t22072500\t0.106125179900\n-chrX\t22072500\t22077500\t0.080747570696\n-chrX\t22077500\t22082500\t0.106743160746\n-chrX\t22082500\t22087500\t0.132120769950\n-chrX\t22087500\t22092500\t0.132120769950\n-chrX\t22092500\t22097500\t0.096957859903\n-chrX\t22097500\t22102500\t0.052654600230\n-chrX\t22102500\t22107500\t0.048816592592\n-chrX\t22107500\t22112500\t0.024811309127\n-chrX\t22112500\t22117500\t-0.000883655236\n-chrX\t22117500\t22122500\t0.015442869443\n-chrX\t22122500\t22127500\t0.022485603024\n-chrX\t22127500\t22132500\t0.044543449145\n-chrX\t22132500\t22137500\t0.032640726462\n-chrX\t22137500\t22142500\t0.033129068940\n-chrX\t22142500\t22147500\t0.059285004895\n-chrX\t22147500\t22152500\t0.059285004895\n-chrX\t22152500\t22157500\t0.059285004895\n-chrX\t22157500\t22162500\t0.059285004895\n-chrX\t22162500\t22167500\t0.147596677095\n-chrX\t22167500\t22172500\t0.134240838041\n-chrX\t22172500\t22177500\t0.126984604850\n-chrX\t22177500\t22182500\t0.135348355500\n-chrX\t22182500\t22187500\t0.156774459894\n-chrX\t22187500\t22192500\t0.164412573558\n-chrX\t22192500\t22197500\t0.122190643761\n-chrX\t22197500\t22202500\t0.106308425117\n-chrX\t22202500\t22207500\t0.106308425117\n-chrX\t22207500\t22212500\t0.131868113654\n-chrX\t22212500\t22217500\t0.104929080207\n-chrX\t22217500\t22222500\t0.115109012439\n-chrX\t22222500\t22227500\t0.076406798215\n-chrX\t22227500\t22232500\t0.097294803085\n-chrX\t22232500\t22237500\t0.090252069504\n-chrX\t22237500\t22242500\t0.090252069504\n-chrX\t22242500\t22247500\t0.056001520895\n-chrX\t22247500\t22252500\t0.056001520895\n-chrX\t22252500\t22257500\t0.031199069260\n-chrX\t22257500\t22262500\t0.031363850474\n-chrX\t22262500\t22267500\t-0.007556876367\n-chrX\t22267500\t22272500\t-0.006993474280\n-chrX\t22272500\t22277500\t-0.020337459503\n-chrX\t22277500\t22282500\t0.006546907334\n-chrX\t22282500\t22287500\t0.038722263967\n-chrX\t22287500\t22292500\t0.028601375545\n-chrX\t22292500\t22297500\t0.022101371933\n-chrX\t22297500\t22302500\t0.022499357552\n-chrX\t22302500\t22307500\t0.129379428086\n-chrX\t22307500\t22312500\t0.171671654101\n-chrX\t22312500\t22317500\t0.201364155908\n-chrX\t22317500\t22322500\t0.229564260376\n-chrX\t22322500\t22327500\t0.229859357747\n-chrX\t22327500\t22332500\t0.272616621770\n-chrX\t22332500\t22337500\t0.237284734617\n-chrX\t22337500\t22342500\t0.198850098100\n-chrX\t22342500\t22347500\t0.191681320909\n-chrX\t22347500\t22352500\t0.202835839679\n-chrX\t22352500\t22357500\t0.215783374482\n-chrX\t22357500\t22362500\t0.230956918733\n-chrX\t22362500\t22367500\t0.177785960304\n-chrX\t22367500\t22372500\t0.171517172517\n-chrX\t22372500\t22377500\t0.164090449782\n-chrX\t22377500\t22382500\t0.193182460259\n-chrX\t22382500\t22387500\t0.128770173959\n-chrX\t22387500\t22392500\t-0.008920627195\n-chrX\t22392500\t22397500\t0.004303375190\n-chrX\t22397500\t22402500\t-0.087847665198\n-chrX\t22402500\t22407500\t-0.090053401346\n-chrX\t22407500\t22412500\t-0.092797878579\n-chrX\t22412500\t22417500\t-0.096193150539\n-chrX\t22417500\t22421413\t0.000000000000\n-chrXHet\t2500\t202056\t0.000000000000\n-chrYHet\t2500\t346019\t0.000000000000\n'
b
diff -r 38a612a120a8 -r dbf4afa03b00 test-data/multiFDR_tad_score.bm
--- a/test-data/multiFDR_tad_score.bm Fri Apr 27 03:31:20 2018 -0400
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
b
b'@@ -1,23830 +0,0 @@\n-#{"step":20000,"minDepth":60000,"maxDepth":180000,"binsize":5000}\n-chr2L\t0\t5000\t0.000000\t0.000000\t0.000000\t0.000000\n-chr2L\t5000\t10000\t-0.190625\t-0.174707\t-0.154720\t-0.137904\n-chr2L\t10000\t15000\t0.066682\t0.018642\t-0.025257\t-0.043446\n-chr2L\t15000\t20000\t0.322345\t0.375915\t0.213391\t0.130387\n-chr2L\t20000\t25000\t0.151060\t0.206256\t0.100913\t0.048686\n-chr2L\t25000\t30000\t0.223202\t0.136530\t0.054937\t0.015478\n-chr2L\t30000\t35000\t0.162034\t0.091008\t0.025000\t-0.006056\n-chr2L\t35000\t40000\t0.278414\t0.244807\t0.127984\t0.069064\n-chr2L\t40000\t45000\t0.345475\t0.229249\t0.118039\t0.062053\n-chr2L\t45000\t50000\t0.244443\t0.153776\t0.068088\t0.025978\n-chr2L\t50000\t55000\t0.194732\t0.116754\t0.043771\t0.008530\n-chr2L\t55000\t60000\t0.131922\t0.069954\t0.012953\t-0.013669\n-chr2L\t60000\t65000\t0.110947\t0.054570\t0.003034\t0.006401\n-chr2L\t65000\t70000\t0.110947\t0.041677\t-0.005275\t-0.001516\n-chr2L\t70000\t75000\t0.046047\t-0.010891\t-0.040001\t-0.028401\n-chr2L\t75000\t80000\t-0.017064\t-0.022169\t-0.047198\t-0.015595\n-chr2L\t80000\t85000\t-0.017064\t-0.027382\t-0.050361\t-0.020323\n-chr2L\t85000\t90000\t0.016118\t-0.039716\t-0.016677\t0.004835\n-chr2L\t90000\t95000\t0.041799\t-0.025271\t-0.012418\t0.046215\n-chr2L\t95000\t100000\t-0.054440\t-0.050431\t-0.030731\t0.028976\n-chr2L\t100000\t105000\t-0.096240\t-0.102918\t-0.061669\t0.002945\n-chr2L\t105000\t110000\t-0.054522\t-0.046705\t-0.010830\t0.021258\n-chr2L\t110000\t115000\t-0.057517\t-0.048390\t-0.015117\t0.015967\n-chr2L\t115000\t120000\t-0.021451\t-0.028103\t-0.008769\t0.018616\n-chr2L\t120000\t125000\t-0.021451\t-0.028103\t0.007490\t0.014557\n-chr2L\t125000\t130000\t0.036764\t0.009461\t0.007490\t0.010874\n-chr2L\t130000\t135000\t0.032259\t0.044144\t0.006364\t0.006749\n-chr2L\t135000\t140000\t0.132222\t0.100373\t0.031355\t0.019858\n-chr2L\t140000\t145000\t0.134148\t0.101456\t0.031836\t0.016774\n-chr2L\t145000\t150000\t0.073990\t0.131362\t0.045128\t0.021656\n-chr2L\t150000\t155000\t0.106030\t0.112168\t0.036597\t0.013567\n-chr2L\t155000\t160000\t0.133532\t0.059076\t0.029695\t0.006942\n-chr2L\t160000\t165000\t0.133532\t0.102675\t0.029695\t0.004539\n-chr2L\t165000\t170000\t0.071956\t0.028910\t0.012210\t0.002935\n-chr2L\t170000\t175000\t0.071956\t0.028910\t0.012210\t0.002935\n-chr2L\t175000\t180000\t0.030773\t0.005744\t0.001914\t-0.002510\n-chr2L\t180000\t185000\t0.058380\t0.021273\t0.008816\t-0.020839\n-chr2L\t185000\t190000\t0.053874\t-0.018479\t-0.006865\t-0.029133\n-chr2L\t190000\t195000\t0.065421\t-0.011983\t0.009188\t-0.020642\n-chr2L\t195000\t200000\t-0.046647\t-0.075021\t-0.035524\t-0.035461\n-chr2L\t200000\t205000\t-0.029585\t-0.065424\t-0.031258\t-0.033205\n-chr2L\t205000\t210000\t-0.071569\t-0.028418\t-0.047355\t-0.040300\n-chr2L\t210000\t215000\t-0.071569\t-0.028418\t-0.063896\t-0.058904\n-chr2L\t215000\t220000\t-0.005316\t-0.022150\t-0.061110\t-0.057431\n-chr2L\t220000\t225000\t-0.005316\t-0.022150\t-0.061110\t-0.057431\n-chr2L\t225000\t230000\t0.047347\t-0.022150\t-0.061110\t-0.057431\n-chr2L\t230000\t235000\t0.047347\t-0.022150\t-0.061110\t-0.057431\n-chr2L\t235000\t240000\t0.017161\t-0.039130\t-0.068656\t-0.061422\n-chr2L\t240000\t245000\t0.017161\t-0.039130\t-0.068656\t-0.071671\n-chr2L\t245000\t250000\t-0.020460\t-0.060292\t-0.078062\t-0.050469\n-chr2L\t250000\t255000\t-0.073124\t-0.060292\t-0.078062\t-0.050469\n-chr2L\t255000\t260000\t-0.047443\t-0.045846\t-0.071641\t-0.047073\n-chr2L\t260000\t265000\t-0.047443\t-0.045846\t-0.071641\t-0.047073\n-chr2L\t265000\t270000\t0.007611\t-0.014878\t-0.057878\t-0.024732\n-chr2L\t270000\t275000\t-0.009451\t-0.054099\t-0.062143\t-0.026988\n-chr2L\t275000\t280000\t-0.045518\t-0.074386\t-0.071160\t-0.044985\n-chr2L\t280000\t285000\t-0.110418\t-0.110893\t-0.087385\t-0.035330\n-chr2L\t285000\t290000\t-0.047443\t-0.075470\t-0.067013\t-0.022201\n-chr2L\t290000\t295000\t-0.047443\t-0.075470\t-0.067013\t-0.022201\n-chr2L\t295000\t300000\t-0.109190\t-0.110202\t-0.082450\t-0.030366\n-chr2L\t300000\t305000\t-0.109190\t-0.110202\t-0.082450\t-0.030366\n-chr2L\t305000\t310000\t-0.057829\t-0.081311\t-0.053068\t-0.014825\n-chr2L\t310000\t315000\t-0.057829\t-0.081311\t-0.024594\t-0.014825\n-chr2L\t315000\t320000\t-0.058947\t-0.081940\t-0.022407\t-0.011557\n-chr2L\t320000\t325000\t-0.070559\t-0.026475\t0.018928\t0.001481\n-chr2L\t325000\t330000\t-0.087621\t0.003965\t0.014663\t-0.000775\n-chr2L\t330000\t335000\t0.055695\t0.059801\t0.045183'..b'776\t0.034708\n-chrX\t22115000\t22120000\t-0.085916\t-0.018370\t0.055167\t0.045584\n-chrX\t22120000\t22125000\t-0.085916\t0.046936\t0.055167\t0.045584\n-chrX\t22125000\t22130000\t-0.085916\t0.046936\t0.083338\t0.045584\n-chrX\t22130000\t22135000\t-0.011185\t0.031873\t0.102021\t0.055466\n-chrX\t22135000\t22140000\t-0.011185\t-0.033434\t0.102021\t0.073161\n-chrX\t22140000\t22145000\t-0.011185\t-0.033434\t0.103974\t0.073161\n-chrX\t22145000\t22150000\t0.062565\t0.008051\t0.097034\t0.069490\n-chrX\t22150000\t22155000\t0.062565\t0.008051\t0.097034\t0.069490\n-chrX\t22155000\t22160000\t0.062565\t0.008051\t0.097034\t0.069490\n-chrX\t22160000\t22165000\t0.062565\t0.008051\t0.097034\t0.069490\n-chrX\t22165000\t22170000\t0.169640\t0.190155\t0.123803\t0.106789\n-chrX\t22170000\t22175000\t0.142169\t0.174703\t0.116935\t0.103156\n-chrX\t22175000\t22180000\t0.142169\t0.174703\t0.087910\t0.103156\n-chrX\t22180000\t22185000\t0.142169\t0.174703\t0.121365\t0.103156\n-chrX\t22185000\t22190000\t0.246152\t0.174703\t0.108735\t0.097509\n-chrX\t22190000\t22195000\t0.246152\t0.174703\t0.108735\t0.128061\n-chrX\t22195000\t22200000\t0.172402\t0.069834\t0.115099\t0.131428\n-chrX\t22200000\t22205000\t0.068419\t0.125639\t0.115099\t0.116076\n-chrX\t22205000\t22210000\t0.068419\t0.125639\t0.115099\t0.116076\n-chrX\t22210000\t22215000\t0.068419\t0.184129\t0.158848\t0.116076\n-chrX\t22215000\t22220000\t0.068419\t0.184129\t0.081644\t0.085523\n-chrX\t22220000\t22225000\t0.167629\t0.125639\t0.081644\t0.085523\n-chrX\t22225000\t22230000\t0.088025\t0.080862\t0.061743\t0.074997\n-chrX\t22230000\t22235000\t0.192007\t0.080862\t0.061743\t0.054567\n-chrX\t22235000\t22240000\t0.192007\t0.080862\t0.033572\t0.054567\n-chrX\t22240000\t22245000\t0.192007\t0.080862\t0.033572\t0.054567\n-chrX\t22245000\t22250000\t0.088025\t0.080862\t0.007577\t0.047542\n-chrX\t22250000\t22255000\t0.088025\t0.080862\t0.007577\t0.047542\n-chrX\t22255000\t22260000\t-0.011185\t0.080862\t0.007577\t0.047542\n-chrX\t22260000\t22265000\t-0.011185\t0.080862\t0.033572\t0.022206\n-chrX\t22265000\t22270000\t-0.085916\t-0.019664\t0.044893\t0.030459\n-chrX\t22270000\t22275000\t-0.085916\t-0.019664\t0.044893\t0.032712\n-chrX\t22275000\t22280000\t-0.085916\t-0.075470\t0.044893\t0.035142\n-chrX\t22280000\t22285000\t-0.012165\t-0.033985\t0.038528\t0.033810\n-chrX\t22285000\t22290000\t-0.012165\t0.092013\t0.038528\t0.036513\n-chrX\t22290000\t22295000\t-0.012165\t0.092013\t0.012533\t0.022025\n-chrX\t22295000\t22300000\t-0.012165\t0.092013\t0.012533\t-0.003975\n-chrX\t22300000\t22305000\t-0.012165\t0.092013\t0.012533\t-0.002383\n-chrX\t22305000\t22310000\t0.288555\t0.135170\t0.061021\t0.032772\n-chrX\t22310000\t22315000\t0.288555\t0.248101\t0.093651\t0.056380\n-chrX\t22315000\t22320000\t0.288555\t0.305226\t0.129413\t0.082263\n-chrX\t22320000\t22325000\t0.281418\t0.359702\t0.167374\t0.109763\n-chrX\t22325000\t22330000\t0.262960\t0.359702\t0.178810\t0.117966\n-chrX\t22330000\t22335000\t0.389975\t0.370602\t0.198066\t0.131823\n-chrX\t22335000\t22340000\t0.313251\t0.327445\t0.185726\t0.122716\n-chrX\t22340000\t22345000\t0.309535\t0.214480\t0.164346\t0.107040\n-chrX\t22345000\t22350000\t0.309535\t0.160722\t0.178928\t0.117541\n-chrX\t22350000\t22355000\t0.309535\t0.176511\t0.195663\t0.129634\n-chrX\t22355000\t22360000\t0.309535\t0.194851\t0.215077\t0.143670\n-chrX\t22360000\t22365000\t0.309535\t0.216340\t0.237810\t0.160142\n-chrX\t22365000\t22370000\t0.235638\t0.241958\t0.142695\t0.090852\n-chrX\t22370000\t22375000\t0.144441\t0.272856\t0.163157\t0.105614\n-chrX\t22375000\t22380000\t0.033332\t0.310817\t0.188354\t0.123859\n-chrX\t22380000\t22385000\t0.047108\t0.358633\t0.220115\t0.146874\n-chrX\t22385000\t22390000\t0.065244\t0.162319\t0.174180\t0.113338\n-chrX\t22390000\t22395000\t-0.096387\t0.049914\t0.014061\t-0.003271\n-chrX\t22395000\t22400000\t-0.098757\t0.075839\t0.031161\t0.008970\n-chrX\t22400000\t22405000\t-0.101349\t-0.094042\t-0.082297\t-0.073703\n-chrX\t22405000\t22410000\t-0.104371\t-0.096430\t-0.084079\t-0.075333\n-chrX\t22410000\t22415000\t-0.108137\t-0.099498\t-0.086325\t-0.077231\n-chrX\t22415000\t22420000\t-0.112872\t-0.103287\t-0.089234\t-0.079379\n-chrX\t22420000\t22422827\t0.000000\t0.000000\t0.000000\t0.000000\n-chrXHet\t0\t5000\t0.000000\t0.000000\t0.000000\t0.000000\n-chrXHet\t200000\t204112\t0.000000\t0.000000\t0.000000\t0.000000\n-chrYHet\t0\t5000\t0.000000\t0.000000\t0.000000\t0.000000\n-chrYHet\t345000\t347038\t0.000000\t0.000000\t0.000000\t0.000000\n'
b
diff -r 38a612a120a8 -r dbf4afa03b00 test-data/small_test_matrix_result.bam
b
Binary file test-data/small_test_matrix_result.bam has changed