| Previous changeset 4:9d1997b08ed6 (2019-12-18) Next changeset 6:5e9171dc8244 (2020-02-20) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6b5d0d6f038ebd0fae5dbca02ada51555518ed85" |
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modified:
inspect.xml |
| b |
| diff -r 9d1997b08ed6 -r 08192eebb47d inspect.xml --- a/inspect.xml Wed Dec 18 16:04:45 2019 -0500 +++ b/inspect.xml Mon Feb 10 05:29:16 2020 -0500 |
| b |
| @@ -804,7 +804,7 @@ - pct_dropout_by_{expr_type} (e.g. "pct_dropout_by_counts", percentage of cells this feature does not appear in) More details on the `scanpy documentation -<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.calculate_qc_metrics.html>`__ +<https://icb-scanpy.readthedocs-hosted.com/en/@version@/api/scanpy.pp.calculate_qc_metrics.html>`__ Compute a neighborhood graph of observations, using `pp.neighbors` ================================================================== @@ -823,7 +823,7 @@ This data are stored in the unstructured annotation (uns) and can be accessed using the inspect tool for AnnData objects More details on the `scanpy documentation -<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.neighbors.html>`__ +<https://icb-scanpy.readthedocs-hosted.com/en/@version@/api/scanpy.pp.neighbors.html>`__ Score a set of genes, using `tl.score_genes` ============================================ @@ -836,7 +836,7 @@ for Scanpy by Davide Cittaro. More details on the `scanpy documentation -<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.tl.score_genes.html>`__ +<https://icb-scanpy.readthedocs-hosted.com/en/@version@/api/scanpy.tl.score_genes.html>`__ Score cell cycle genes, using `tl.score_genes_cell_cycle` ========================================================= @@ -846,7 +846,7 @@ `score_genes` for more explanation. More details on the `scanpy documentation -<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.tl.score_genes_cell_cycle.html>`__ +<https://icb-scanpy.readthedocs-hosted.com/en/@version@/api/scanpy.tl.score_genes_cell_cycle.html>`__ Rank genes for characterizing groups, using `tl.rank_genes_groups` ================================================================== @@ -862,7 +862,7 @@ This data are stored in the unstructured annotation (uns) and can be accessed using the inspect tool for AnnData objects More details on the `scanpy documentation -<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.tl.rank_genes_groups.html>`__ +<https://icb-scanpy.readthedocs-hosted.com/en/@version@/api/scanpy.tl.rank_genes_groups.html>`__ Calculate an overlap score between data-deriven marker genes and provided markers (`tl.marker_gene_overlap`) @@ -875,13 +875,13 @@ ========================================= More details on the `scanpy documentation -<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.log1p.html>`__ +<https://icb-scanpy.readthedocs-hosted.com/en/@version@/api/scanpy.pp.log1p.html>`__ Scale data to unit variance and zero mean (`pp.scale`) ====================================================== More details on the `scanpy documentation -<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.scale.html>`__ +<https://icb-scanpy.readthedocs-hosted.com/en/@version@/api/scanpy.pp.scale.html>`__ Computes the square root the data matrix (`pp.sqrt`) ==================================================== |