Repository 'medaka_consensus_pipeline'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus_pipeline

Changeset 16:fc8804320156 (2023-09-26)
Previous changeset 15:79e9a869f40e (2022-10-12)
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 7105600c6ba7a49e8933e1a1357566fc2126df58
modified:
macros.xml
b
diff -r 79e9a869f40e -r fc8804320156 macros.xml
--- a/macros.xml Wed Oct 12 07:44:40 2022 +0000
+++ b/macros.xml Tue Sep 26 10:11:13 2023 +0000
b
@@ -1,6 +1,6 @@
 <macros>
     <token name="@TOOL_VERSION@">1.7.2</token>
-    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@VERSION_SUFFIX@">1</token>
     <token name="@PROFILE@">21.01</token>
     <xml name="bio_tools">
         <xrefs>
@@ -37,10 +37,10 @@
             #if $reference_source.ref_file.ext.endswith(".gz")
                 gunzip -c '$reference_source.ref_file' > reference.fa &&
             #else
-                ln -f -s '$reference_source.ref_file' reference.fa &&
+                cp '$reference_source.ref_file' reference.fa &&
             #end if
         #else:
-            ln -f -s '$reference_source.ref_file.fields.path' reference.fa &&
+            cp '$reference_source.ref_file.fields.path' reference.fa &&
         #end if
     ]]></token>