| Previous changeset 15:00fe2ff64467 (2016-12-08) Next changeset 17:fc288950c3b7 (2017-04-13) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1 |
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modified:
picard_CollectRnaSeqMetrics.xml picard_macros.xml |
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| diff -r 00fe2ff64467 -r 6741a8ace658 picard_CollectRnaSeqMetrics.xml --- a/picard_CollectRnaSeqMetrics.xml Thu Dec 08 06:43:38 2016 -0500 +++ b/picard_CollectRnaSeqMetrics.xml Wed Feb 08 12:45:35 2017 -0500 |
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| @@ -228,8 +228,8 @@ RIBOSOMAL_INTERVALS=File Location of rRNA sequences in genome, in interval_list format. If not specified no bases will be identified as being ribosomal. Format described here: - http://picard.sourceforge.net/javadoc/net/sf/picard/util/IntervalList.html and can be - generated from BED datasetes using Galaxy's wrapper for picard_BedToIntervalList tool + https://samtools.github.io/htsjdk/javadoc/htsjdk/htsjdk/samtools/util/IntervalList.html and can be + generated from BED datasetes using Galaxy's wrapper for picard_BedToIntervalList tool STRAND_SPECIFICITY=StrandSpecificity STRAND=StrandSpecificity For strand-specific library prep. For unpaired reads, use FIRST_READ_TRANSCRIPTION_STRAND |
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| diff -r 00fe2ff64467 -r 6741a8ace658 picard_macros.xml --- a/picard_macros.xml Thu Dec 08 06:43:38 2016 -0500 +++ b/picard_macros.xml Wed Feb 08 12:45:35 2017 -0500 |
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| @@ -32,7 +32,7 @@ **Additional information** -Additional information about Picard tools is available from Picard web site at http://broadinstitute.github.io/picard/. +Additional information about Picard tools is available from Picard web site at http://broadinstitute.github.io/picard/ . </token> |