| Previous changeset 20:ddf5c37952ac (2019-05-16) Next changeset 22:3d0c7bdf12f5 (2021-09-12) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastqc commit 8c357db3dc0861b61f04c7d9f70c5e170e70daa4 |
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modified:
rgFastQC.xml |
| b |
| diff -r ddf5c37952ac -r e7b2202befea rgFastQC.xml --- a/rgFastQC.xml Thu May 16 07:45:56 2019 -0400 +++ b/rgFastQC.xml Fri May 24 13:14:52 2019 -0400 |
| b |
| @@ -85,32 +85,32 @@ <tests> <test> <param name="input_file" value="1000trimmed.fastq" /> - <output name="html_file" file="fastqc_report.html" ftype="html" lines_diff="100"/> + <output name="html_file" file="fastqc_report.html" ftype="html" lines_diff="2"/> <output name="text_file" file="fastqc_data.txt" ftype="txt"/> </test> <test> <param name="input_file" value="1000trimmed.fastq" /> <param name="contaminants" value="fastqc_contaminants.txt" ftype="tabular" /> - <output name="html_file" file="fastqc_report_contaminants.html" ftype="html" lines_diff="100"/> + <output name="html_file" file="fastqc_report_contaminants.html" ftype="html" lines_diff="2"/> <output name="text_file" file="fastqc_data_contaminants.txt" ftype="txt"/> </test> <test> <param name="input_file" value="1000trimmed.fastq" /> <param name="adapters" value="fastqc_adapters.txt" ftype="tabular" /> - <output name="html_file" file="fastqc_report_adapters.html" ftype="html" lines_diff="100"/> + <output name="html_file" file="fastqc_report_adapters.html" ftype="html" lines_diff="2"/> <output name="text_file" file="fastqc_data_adapters.txt" ftype="txt"/> </test> <test> <param name="input_file" value="1000trimmed.fastq" /> <param name="limits" value="fastqc_customlimits.txt" ftype="txt" /> - <output name="html_file" file="fastqc_report_customlimits.html" ftype="html" lines_diff="100"/> + <output name="html_file" file="fastqc_report_customlimits.html" ftype="html" lines_diff="2"/> <output name="text_file" file="fastqc_data_customlimits.txt" ftype="txt"/> </test> <test> <param name="input_file" value="1000trimmed.fastq" ftype="fastq" /> <param name="kmers" value="3" /> <param name="limits" value="fastqc_customlimits.txt" ftype="txt" /> - <output name="html_file" file="fastqc_report_kmer.html" ftype="html" lines_diff="100"/> + <output name="html_file" file="fastqc_report_kmer.html" ftype="html" lines_diff="2"/> <output name="text_file" file="fastqc_data_kmer.txt" ftype="txt"/> <assert_command> <has_text text="--kmers 3"/> @@ -119,13 +119,13 @@ <test> <param name="input_file" value="1000trimmed.fastq" /> <param name="min_length" value="108" /> - <output name="html_file" file="fastqc_report_min_length.html" ftype="html" lines_diff="100"/> + <output name="html_file" file="fastqc_report_min_length.html" ftype="html" lines_diff="2"/> <output name="text_file" file="fastqc_data_min_length.txt" ftype="txt"/> </test> <test> <param name="input_file" value="1000trimmed.fastq" ftype="fastq" /> <param name="nogroup" value="--nogroup" /> - <output name="html_file" file="fastqc_report_nogroup.html" ftype="html" lines_diff="100"/> + <output name="html_file" file="fastqc_report_nogroup.html" ftype="html" lines_diff="2"/> <output name="text_file" file="fastqc_data_nogroup.txt" ftype="txt"/> <assert_command> <has_text text="--nogroup"/> @@ -133,7 +133,7 @@ </test> <test> <param name="input_file" value="hisat_output_1.bam" ftype="bam" /> - <output name="html_file" file="fastqc_report_hisat.html" ftype="html" lines_diff="100"/> + <output name="html_file" file="fastqc_report_hisat.html" ftype="html" lines_diff="2"/> <output name="text_file" file="fastqc_data_hisat.txt" ftype="txt"/> </test> </tests> |