| Previous changeset 19:248f85ff0733 (2020-06-23) Next changeset 21:494b2ec08162 (2020-07-06) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sra-tools commit ec1cc6c0c290e9931780ea128bb48caac37977db" |
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modified:
fasterq_dump.xml fastq_dump.xml sam_dump.xml sra_macros.xml |
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| diff -r 248f85ff0733 -r 964579f93c54 fasterq_dump.xml --- a/fasterq_dump.xml Tue Jun 23 17:18:45 2020 -0400 +++ b/fasterq_dump.xml Wed Jul 01 17:48:02 2020 -0400 |
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| @@ -1,4 +1,4 @@ -<tool id="fasterq_dump" name="Faster Download and Extract Reads in FASTQ" version="@VERSION@+galaxy1" profile="18.01"> +<tool id="fasterq_dump" name="Faster Download and Extract Reads in FASTQ" version="@VERSION@+galaxy2" profile="18.01"> <description>format from NCBI SRA</description> <macros> <import>sra_macros.xml</import> |
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| diff -r 248f85ff0733 -r 964579f93c54 fastq_dump.xml --- a/fastq_dump.xml Tue Jun 23 17:18:45 2020 -0400 +++ b/fastq_dump.xml Wed Jul 01 17:48:02 2020 -0400 |
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| @@ -1,4 +1,4 @@ -<tool id="fastq_dump" name="Download and Extract Reads in FASTA/Q" version="@VERSION@+galaxy1" profile="18.01"> +<tool id="fastq_dump" name="Download and Extract Reads in FASTA/Q" version="@VERSION@+galaxy2" profile="18.01"> <description>format from NCBI SRA</description> <macros> <import>sra_macros.xml</import> |
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| diff -r 248f85ff0733 -r 964579f93c54 sam_dump.xml --- a/sam_dump.xml Tue Jun 23 17:18:45 2020 -0400 +++ b/sam_dump.xml Wed Jul 01 17:48:02 2020 -0400 |
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| @@ -1,4 +1,4 @@ -<tool id="sam_dump" name="Download and Extract Reads in BAM" version="@VERSION@+galaxy1" profile="18.01"> +<tool id="sam_dump" name="Download and Extract Reads in BAM" version="@VERSION@+galaxy2" profile="18.01"> <description>format from NCBI SRA</description> <macros> <import>sra_macros.xml</import> |
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| diff -r 248f85ff0733 -r 964579f93c54 sra_macros.xml --- a/sra_macros.xml Tue Jun 23 17:18:45 2020 -0400 +++ b/sra_macros.xml Wed Jul 01 17:48:02 2020 -0400 |
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| @@ -23,7 +23,7 @@ #set $column = $input.file_list.unsanitized.metadata.column_names.index('Run') + 1 cut -f $column '$input.file_list'| tail -n +2 > "manifest" && #else - ln -s '$input.file_list' > manifest && + ln -s '$input.file_list' manifest && #end if for acc in `@ACCESSIONS_FROM_FILE@ manifest` ; do ( |