| Previous changeset 2:2fd6033d0e9c (2017-07-20) Next changeset 4:8cacfcf96a52 (2020-03-01) |
|
Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fasta_filter_by_length commit 66d6c3cbb835114dc80e61216756e90da156f6d6" |
|
modified:
fasta_filter_by_length.py fasta_filter_by_length.xml |
|
added:
test-data/fasta_tool_filter_length_2.out |
| b |
| diff -r 2fd6033d0e9c -r e626b3ff9922 fasta_filter_by_length.py --- a/fasta_filter_by_length.py Thu Jul 20 13:49:07 2017 -0400 +++ b/fasta_filter_by_length.py Tue Dec 17 13:13:32 2019 -0500 |
| b |
| @@ -38,7 +38,7 @@ tmp_buf = line tmp_size = 0 else: - if max_length == 0 or tmp_size < max_length: + if max_length == 0 or tmp_size <= max_length: tmp_size += len(line.rstrip('\r\n')) tmp_buf += line # final flush of buffer |
| b |
| diff -r 2fd6033d0e9c -r e626b3ff9922 fasta_filter_by_length.xml --- a/fasta_filter_by_length.xml Thu Jul 20 13:49:07 2017 -0400 +++ b/fasta_filter_by_length.xml Tue Dec 17 13:13:32 2019 -0500 |
| b |
| @@ -22,6 +22,12 @@ <param name="max_length" value="0" /> <output name="output" file="fasta_tool_filter_length_1.out" /> </test> + <test> + <param name="input" value="4.fasta" /> + <param name="min_length" value="0" /> + <param name="max_length" value="60" /> + <output name="output" file="fasta_tool_filter_length_2.out" /> + </test> </tests> <help> |
| b |
| diff -r 2fd6033d0e9c -r e626b3ff9922 test-data/fasta_tool_filter_length_2.out --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/fasta_tool_filter_length_2.out Tue Dec 17 13:13:32 2019 -0500 |
| b |
| @@ -0,0 +1,2 @@ +>EYKX4VC01B65GS length=54 xy=0784_1754 region=1 run=R_2007_11_07_16_15_57_ +CCGGTATCCGGGTGCCGTGATGAGCGCCACCGGAACGAATTCGACTATGCCGAA |