| Previous changeset 5:0306a96cc446 (2016-04-25) Next changeset 7:5c37c1d214a2 (2016-07-04) |
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Commit message:
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 960f403303e1691bdd6137c46895feb333b36a82 |
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modified:
macros.xml tool_dependencies.xml |
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| diff -r 0306a96cc446 -r 982d690f4e8c macros.xml --- a/macros.xml Mon Apr 25 11:14:27 2016 -0400 +++ b/macros.xml Mon Jul 04 08:46:02 2016 -0400 |
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| @@ -3,9 +3,9 @@ <xml name="requirements"> <requirements> <requirement type="package" version="3.1.2">R</requirement> - <requirement type="package" version="0.4_1">r-snow</requirement> - <requirement type="package" version="1.44.0">bioconductor-xcms</requirement> - <requirement type="package" version="1.1_4">r-batch</requirement> + <requirement type="package" version="0.4_1">r-snow</requirement> + <requirement type="package" version="1.46.0">bioconductor-xcms</requirement> + <requirement type="package" version="1.1_4">r-batch</requirement> </requirements> </xml> <xml name="stdio"> @@ -26,6 +26,30 @@ sh -c "exit \$return" </token> + <!-- zipfile load for planemo test --> + + <token name="@COMMAND_ZIPFILE_LOAD@"> + #if $zipfile_load_conditional.zip_file: + zipfile $zipfile_load_conditional.zip_file + #end if + </token> + + <xml name="zipfile_load"> + <conditional name="zipfile_load_conditional"> + <param name="zipfile_load_select" type="select" label="Resubmit your zip file" help="Use only if you get a message which say that your original zip file have been deleted on the server." > + <option value="no" >no need</option> + <option value="yes" selected="peakgroups">yes</option> + </param> + <when value="no"> + </when> + <when value="yes"> + <param name="zip_file" type="data" format="no_unzip.zip,zip" label="Zip file" /> + </when> + </conditional> + </xml> + + + <token name="@HELP_AUTHORS@"> .. class:: infomark |
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| diff -r 0306a96cc446 -r 982d690f4e8c tool_dependencies.xml --- a/tool_dependencies.xml Mon Apr 25 11:14:27 2016 -0400 +++ b/tool_dependencies.xml Mon Jul 04 08:46:02 2016 -0400 |
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| @@ -3,7 +3,7 @@ <package name="R" version="3.1.2"> <repository changeset_revision="4d2fd1413b56" name="package_r_3_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> - <package name="bioconductor-xcms" version="1.44.0"> - <repository changeset_revision="58ebb405a3d6" name="package_bioconductor_xcms_1_44_0" owner="lecorguille" toolshed="https://toolshed.g2.bx.psu.edu" /> + <package name="bioconductor-xcms" version="1.46.0"> + <repository changeset_revision="779207ed5674" name="package_bioconductor_xcms_1_46_0" owner="lecorguille" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> </tool_dependency> |