| Previous changeset 4:567d5b3c52b1 (2018-08-22) Next changeset 6:529bccd5e4a1 (2023-08-10) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/fastx_toolkit/fastx_artifacts_filter commit 4c002e52261da2e7609735883d91fa1610ce6ce7" |
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modified:
fastx_artifacts_filter.xml macros.xml |
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| diff -r 567d5b3c52b1 -r d5e9e83cd3d8 fastx_artifacts_filter.xml --- a/fastx_artifacts_filter.xml Wed Aug 22 11:05:01 2018 -0400 +++ b/fastx_artifacts_filter.xml Thu Jan 30 13:29:54 2020 -0500 |
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| @@ -1,15 +1,16 @@ -<tool id="cshl_fastx_artifacts_filter" version="1.0.1" name="Remove sequencing artifacts"> +<tool id="cshl_fastx_artifacts_filter" version="1.0.1+galaxy0" name="Remove sequencing artifacts"> <description></description> <macros> <import>macros.xml</import> </macros> - <expand macro="requirements" /> + <expand macro="requirements"> + <requirement type="package" version="1.0.8">bzip2</requirement> + </expand> <command detect_errors="exit_code"><![CDATA[ @CATS@ fastx_artifacts_filter -v --o '$output' @FQQUAL@ -@GZIP@ +@GZIP@ > '$output' ]]></command> <inputs> |
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| diff -r 567d5b3c52b1 -r d5e9e83cd3d8 macros.xml --- a/macros.xml Wed Aug 22 11:05:01 2018 -0400 +++ b/macros.xml Thu Jan 30 13:29:54 2020 -0500 |
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| @@ -21,7 +21,9 @@ <token name="@GZIP@"> <![CDATA[ #if $input.is_of_type('fasta.gz', 'fastqsanger.gz', 'fastqsolexa.gz', 'fastqillumina.gz'): - -z + | gzip -c + #elif $input.is_of_type('fastqsanger.bz2', 'fastqsolexa.bz2', 'fastqillumina.bz2'): + | bzip2 -c #end if ]]> </token> |