| Previous changeset 15:198c75abbf55 (2024-03-04) Next changeset 17:da8260eba74b (2025-02-21) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_datasets commit 9a34ebfc4d6b987b71e545dcf5dbdd884cd8d88e |
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modified:
datasets_gene.xml datasets_genome.xml macros.xml |
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| diff -r 198c75abbf55 -r a6a475ed58cb datasets_gene.xml --- a/datasets_gene.xml Mon Mar 04 17:27:59 2024 +0000 +++ b/datasets_gene.xml Fri Jun 07 14:19:58 2024 +0000 |
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| @@ -333,7 +333,7 @@ <param name="text_or_file" value="text"/> <param name="accession" value="brca1"/> </conditional> - <param name="taxon" value="mouse"/> + <param name="taxon" value="house mouse"/> </conditional> <section name="file_choices"> <conditional name="kingdom_cond"> |
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| diff -r 198c75abbf55 -r a6a475ed58cb datasets_genome.xml --- a/datasets_genome.xml Mon Mar 04 17:27:59 2024 +0000 +++ b/datasets_genome.xml Fri Jun 07 14:19:58 2024 +0000 |
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| @@ -262,7 +262,7 @@ <param name="decompress" value="true"/> </section> <assert_stderr> - <has_text text="No assemblies found that match selection"/> + <has_text text="no genome assemblies were found"/> </assert_stderr> <!-- In the current state of the NCBI tool/DB, no output to check. But the returned results seem to change from time to time and it might @@ -305,14 +305,14 @@ <assert_contents> <has_text text="GCF_000007445.1"/> <has_n_lines n="2"/> - <has_n_columns n="14"/> + <has_n_columns n="15"/> </assert_contents> </element> <element name="GCF_000013305.1"> <assert_contents> <has_text text="GCF_000013305.1"/> <has_n_lines n="2"/> - <has_n_columns n="14"/> + <has_n_columns n="15"/> </assert_contents> </element> </output_collection> @@ -444,7 +444,7 @@ <output_collection name="rna_fasta" type="list" count="1"> <element name="GCF_000146045.2" ftype="fasta.gz"> <assert_contents> - <has_size value="2784899" delta="2000"/> + <has_size min="2700000" max="2800000"/> </assert_contents> </element> </output_collection> |
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| diff -r 198c75abbf55 -r a6a475ed58cb macros.xml --- a/macros.xml Mon Mar 04 17:27:59 2024 +0000 +++ b/macros.xml Fri Jun 07 14:19:58 2024 +0000 |
| [ |
| @@ -1,7 +1,7 @@ <macros> - <token name="@TOOL_VERSION@">16.6.0</token> + <token name="@TOOL_VERSION@">16.20.0</token> <token name="@VERSION_SUFFIX@">0</token> - <token name="@PROFILE@">22.05</token> + <token name="@PROFILE@">23.0</token> <token name="@LICENSE@">MIT</token> <token name="@PROFILE_AND_LICENSE@">profile="@PROFILE@" license="@LICENSE@"</token> <token name="@SETUP_CERTIFICATES@"><![CDATA[ @@ -71,7 +71,7 @@ </xml> <xml name="taxon_positional"> - <param name="taxon_positional" type="text" label="Enter taxon" help="e.g. human, mouse, bos taurus, etc. or use Taxonomy ID from NCBI for greater accuracy, use species-level only not genera or larger taxa"/> + <param name="taxon_positional" type="text" label="Enter taxon" help="e.g. human, house mouse, bos taurus, etc. or use Taxonomy ID from NCBI for greater accuracy, use species-level only not genera or larger taxa"/> </xml> <xml name="ortholog"> |