| Previous changeset 1:0f20ed06ed6c (2021-04-27) Next changeset 3:3b75d5285aff (2021-06-07) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 8a6f8a1c1cb3fea223e6bf628b930a1182088b0b" |
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modified:
nextclade.xml |
| b |
| diff -r 0f20ed06ed6c -r 6cd62b6d2b5c nextclade.xml --- a/nextclade.xml Tue Apr 27 11:10:56 2021 +0000 +++ b/nextclade.xml Thu May 20 21:12:00 2021 +0000 |
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| @@ -2,7 +2,7 @@ <description></description> <macros> <import>macros.xml</import> - <token name="@TOOL_VERSION@">0.14.2</token> + <token name="@TOOL_VERSION@">0.14.3</token> <token name="@VERSION_SUFFIX@">1</token> </macros> <requirements> @@ -12,7 +12,11 @@ nextclade --input-fasta '${input_fasta}' #if $outputs and "report_tsv" in $outputs - --output-tsv report.tsv + #if $include_header + --output-tsv '$report_tsv' + #else + --output-tsv report.tsv + #end if #end if #if $outputs and "report_json" in $outputs --output-json '${report_json}' @@ -37,8 +41,8 @@ --input-pcr-primers '${adv.input_pcr_primers}' #end if #end if - #if $outputs and "report_tsv" in $outputs - && tail -n-1 report.tsv >'$report_tsv' + #if $outputs and "report_tsv" in $outputs and not $include_header + && tail -n+2 report.tsv >'$report_tsv' #end if ]]></command> <inputs> @@ -48,6 +52,8 @@ <option value="report_tsv" selected="true">Tabular format report</option> <option value="output_tree">Auspice v2 tree file (JSON format)</option> </param> + <param name="include_header" type="boolean" label="Include header line in output file" + truevalue="true" falsevalue="false" /> <conditional name="adv"> <param name="advanced_options" type="select" label="Use advanced options" > <option value="yes">Yes</option> |