Repository 'umi_tools_extract'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_extract

Changeset 16:7accf7407811 (2021-10-23)
Previous changeset 15:27ac32a22ad2 (2021-09-13) Next changeset 17:f3759eec3018 (2021-11-18)
Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/umi_tools commit b5b83fd1cf0a44edcd9a6cc7562a3add2f47bd3f"
modified:
macros.xml
umi-tools_extract.xml
b
diff -r 27ac32a22ad2 -r 7accf7407811 macros.xml
--- a/macros.xml Mon Sep 13 14:52:06 2021 +0000
+++ b/macros.xml Sat Oct 23 20:38:07 2021 +0000
b
@@ -4,7 +4,7 @@
     <!-- macros applying to all umi_tools -->
 
     <token name="@TOOL_VERSION@">1.1.2</token>
-    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@VERSION_SUFFIX@">1</token>
     <token name="@PROFILE@">21.01</token>
     <xml name="requirements">
         <requirements>
b
diff -r 27ac32a22ad2 -r 7accf7407811 umi-tools_extract.xml
--- a/umi-tools_extract.xml Mon Sep 13 14:52:06 2021 +0000
+++ b/umi-tools_extract.xml Sat Oct 23 20:38:07 2021 +0000
b
@@ -87,8 +87,8 @@
         </expand>
         <expand macro="fastq_barcode_extraction_options_macro"/>
 
-        <param argument="--whitelist" type="data" optional="true" format="tabular,tsv" label="Allowlist of accepted barcodes" />
-        <param argument="--blacklist" type="data" optional="true" format="tabular,tsv" label="Denylist of accepted barcodes" />
+        <param argument="--whitelist" type="data" optional="true" format="txt,tabular,tsv" label="Allowlist of accepted barcodes" />
+        <param argument="--blacklist" type="data" optional="true" format="txt,tabular,tsv" label="Denylist of accepted barcodes" />
         <param argument="--error-correct-cell" type="boolean" truevalue="--error-correct-cell" falsevalue="" checked="false" label="Apply correction to cell barcodes?" help="This only applies if your barcode file has two columns output from the umi_tools whitelist command" />
 
         <conditional name="quality">