| Previous changeset 2:552ef00aba90 (2017-08-22) Next changeset 4:b818b23df1e0 (2017-12-09) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/kallisto/ commit da0d5249fc7bd787ace5dac67bf273891756f324 |
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modified:
kallisto_quant.xml |
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added:
test-data/fusion.txt test-data/hg38_F.fq.gz test-data/hg38_R.fq.gz test-data/hg38_transcripts.fa |
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| diff -r 552ef00aba90 -r 2754990eb583 kallisto_quant.xml --- a/kallisto_quant.xml Tue Aug 22 04:15:40 2017 -0400 +++ b/kallisto_quant.xml Tue Sep 05 03:25:35 2017 -0400 |
| [ |
| @@ -1,5 +1,5 @@ <?xml version="1.0"?> -<tool id="kallisto_quant" name="Kallisto quant" version="@VERSION@.1"> +<tool id="kallisto_quant" name="Kallisto quant" version="@VERSION@.2"> <description>- quantify abundances of RNA-Seq transcripts</description> <macros> <import>macros.xml</import> @@ -98,9 +98,12 @@ <outputs> <data format="h5" name="abundance_h5" from_work_dir="abundance.h5" label="${tool.name} on ${on_string}: Abundances (HDF5)" /> <data format="tabular" name="abundance_tab" from_work_dir="abundance.tsv" label="${tool.name} on ${on_string}: Abundances (tabular)" /> - <data format="bam" name="pseudobam_output" label="${tool.name} on ${on_string}: Pseudoalignments"> + <data format="bam" name="pseudobam_output" from_work_dir="abundance.txt" label="${tool.name} on ${on_string}: Pseudoalignments"> <filter>pseudobam</filter> </data> + <data format="tabular" name="fusion_output" from_work_dir="fusion.txt" label="${tool.name} on ${on_string}: Pizzly input (tabular)"> + <filter>fusion</filter> + </data> </outputs> <tests> <test> @@ -154,6 +157,17 @@ <output name="abundance_tab" file="kallisto_quant_out5.tab" ftype="tabular" /> <output name="pseudobam_output" file="kallisto_quant_out5.bam" ftype="bam" /> </test> + <test> + <param name="reference_genome_source" value="history" /> + <param name="reference" ftype="fasta" value="hg38_transcripts.fa" /> + <param name="single_paired_selector" value="paired" /> + <param name="collection_selector" value="datasets" /> + <param name="fusion" value="true" /> + <param name="forward" ftype="fastq" dbkey="hg38" value="hg38_F.fq.gz" /> + <param name="reverse" ftype="fastq" dbkey="hg38" value="hg38_R.fq.gz" /> + <output name="fusion_output" file="fusion.txt" ftype="tabular" /> + </test> + </tests> <help> <![CDATA[ |
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| diff -r 552ef00aba90 -r 2754990eb583 test-data/fusion.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/fusion.txt Tue Sep 05 03:25:35 2017 -0400 |
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| b'@@ -0,0 +1,368 @@\n+TYPE\tNAME1\tSEQ1\tKPOS1\tNAME2\tSEQ2\tKPOS2\tINFO\tPOS1\tPOS2\n+SPLIT\tSRR1659964.63159.1\tCTCTTTTCAATTGGGGGTCATCTGTCTTAGTTGTCTGAGAGGTGAGAGTCACAGGAGATGTCATCACCACAGTTTGTGGCAGAGAAGTAGCTGAAGGTGT\t0,69\tSRR1659964.63159.2\tCTACAGCCAAGCTCCAAGTCAATATAGCCAACAGAGCAGCAGCTACGGGCAGCAGACTGCATCAGGAGATATGCAAACATATCAGATCCGAACTACACCTN\t0,24\tsplitat=(1,55)\t(ENST00000262053.7,671,RC);(ENST00000551831.5,572,RC)\t(ENST00000397938.6,1057,FW);(ENST00000406548.5,802,FW);(ENST00000437155.6,796,FW);(ENST00000331029.11,784,FW);(ENST00000483415.5,762,FW);(ENST00000414183.6,777,FW);(ENST00000333395.10,757,FW);(ENST00000455726.5,581,FW);(ENST00000332035.10,581,FW);(ENST00000479135.5,2913,FW);(ENST00000332050.10,1066,FW);(ENST00000629659.2,1069,FW)\n+PAIR\tSRR1659964.275470.1\tGGTGCTGTCACATTCAACATTTTCACTGCCACATCACCATGCCACTTTCCCTTGTAGACTGTTCCAAATGATCCAGATCCAATTCTTTGTCCCACTGTAAT\t0,70\tSRR1659964.275470.2\tCTTACCATCTGTAACAAAGGAATCATCACTTAGAGCAACTCAACCAAGTGAAAATGATAAACTTCAGAAAGAACTCAATGTACTTAAATCAGAACAGGACN\t0,66\t\tNA\t(ENST00000496384.6,292,RC);(ENST00000288602.10,1530,RC);(ENST00000497784.1,1504,RC)\t(ENST00000356239.7,3455,FW);(ENST00000493453.1,3442,FW);(ENST00000358100.6,3222,FW);(ENST00000359028.6,3255,FW);(ENST00000619023.4,3430,FW)\n+PAIR\tSRR1659964.394741.1\tCTGGGTGGGTGGTCTGGTGGGTCAGAAGTTGGTGGGAGAAAGGGAAGTGCAGGGGATGGAGACAGGGCGGCACTAGGTTTCATGCTCATATCCGGTCCCGG\t0,32\tSRR1659964.394741.2\tTGTGATTGCCGGCTCCTCCAAGATGAAGGGCTTCTCGTCCTCAGAGTCGGAGAGCTCCAGTGAGTCCAGCTCCTCTGACAGCGAAGACTCCGAAACAGC\t0,68\t\tNA\t(ENST00000537011.5,594,RC);(ENST00000438749.7,405,RC);(ENST00000333756.4,283,RC);(ENST00000614490.4,679,RC)\t(ENST00000360016.9,2351,FW)\n+SPLIT\tSRR1659964.1187742.1\tGTGAGCAGCTCGGCCTCCCTCTGGAAATCCTTCCGGGCAGCCAGGGTGGGATCCTTCAGGGCCCTCACAGCCACAAGCATCTTGTCCTTGGTCGGGCTG\t0,32\tSRR1659964.1187742.2\tAGAGCACGCCATGCCCATTGGGAGAATAGCAGATGTGCAGCACATTAAGAGGAGAGACATCGTGCTGAAGCGAGAACTGGGTGAGGGAGCCTTTGGAA\t0,1\tsplitat=(1,32)\t(ENST00000394480.6,2100,RC);(ENST00000629765.2,1794,RC);(ENST00000626019.2,1778,RC);(ENST00000557856.5,1778,RC);(ENST00000542733.6,1644,RC);(ENST00000558676.5,1780,RC);(ENST00000355254.6,2060,RC);(ENST00000360948.6,2084,RC);(ENST00000357724.6,2060,RC)\t(ENST00000396373.8,1252,FW)\n+PAIR\tSRR1659964.1406983.1\tCACAGCTGGATCTGCCCGCTTCCAGGGTTGGCTAGGCGACTGCTGGTCGGGCCCAGGATCTGATACGGATCTGGCTGGGGCCGTTGCTCTGTATTCTTACT\t0,70\tSRR1659964.1406983.2\tCCACCCCAAACTGGATCCTACAGCCAAGCTCCAAGTCAATATAGCCAACAGAGCAGCAGCTACGGGCAGCAGAGTCCTCCCCTTGGAGGGGCACAAACG\t0,44\t\tNA\t(ENST00000608303.5,641,RC);(ENST00000527786.6,1340,RC);(ENST00000429175.7,1193,RC);(ENST00000534087.3,1072,RC);(ENST00000528790.1,3434,RC);(ENST00000344954.10,641,RC);(ENST00000281428.12,1365,RC)\t(ENST00000397938.6,1040,FW);(ENST00000406548.5,785,FW);(ENST00000437155.6,779,FW);(ENST00000331029.11,767,FW);(ENST00000483415.5,745,FW);(ENST00000414183.6,760,FW);(ENST00000333395.10,740,FW);(ENST00000455726.5,564,FW);(ENST00000332035.10,564,FW);(ENST00000479135.5,2896,FW)\n+PAIR\tSRR1659964.1601068.1\tGTGAGCTGGGAAGGCCCGGTCAGGTTTCGGTGTATGAGTTGAGTTTGGAGATGCATGATGCAGTGGGGACACTGGCGTGCTGGATGGGGATTTGGGCTGCG\t0,56\tSRR1659964.1601068.2\tCAGCTATTGGACCTTACTATGAAAACCATGGATACCAACCGGAAAACCCCTATCCCGCACAGCCCACTGTGGTCCCCACTGTCTACGAGGTGCATCCGGCN\t0,69\t\tNA\t(ENST00000430479.5,1172,RC);(ENST00000405192.6,705,RC);(ENST00000405358.8,653,RC);(ENST00000403527.5,722,RC);(ENST00000405218.6,976,RC);(ENST00000443137.5,926,RC);(ENST00000403685.5,665,RC);(ENST00000472931.6,458,RC);(ENST00000438956.5,606,RC);(ENST00000476720.6,489,RC);(ENST00000497115.5,426,RC);(ENST00000476355.5,799,RC);(ENST00000420159.6,668,RC);(ENST00000242066.9,785,RC)\t(ENST00000332149.9,161,FW);(ENST00000458356.5,115,FW);(ENST00000454499.5,460,FW);(ENST00000424093.5,94,FW);(ENST00000455813.1,242,FW);(ENST00000398585.7,198,FW)\n+SPLIT\tSRR1659964.1931478.1\tCTCCTAGAGTTTTTCCAAGAACCAAGTTCTTCCGAGGGAATTCCCACTTTGGATCCTCCTGTCTCTTGTAGGTTTCAAGTTGACTTCGCGCTGCGTTGGCC\t0,26\tSRR1659964.1931478.2\tGCAGAATACTGTCAGTCTAGAGGAAGAGTTAAGAAAGGCCAACGCAGCGCGAAGTCAACTTGAAACCTACAAGAGACAGGAGGATCCAAAGTGGGAATTCN\t0,49\tsplitat=(0,57)\t(ENST00000'..b'00629765.2,1802,RC);(ENST00000626019.2,1786,RC);(ENST00000557856.5,1786,RC);(ENST00000542733.6,1652,RC);(ENST00000558676.5,1788,RC);(ENST00000559680.1,183,RC);(ENST00000355254.6,2068,RC);(ENST00000360948.6,2092,RC);(ENST00000357724.6,2068,RC)\t(ENST00000396373.8,1067,FW)\n+PAIR\tSRR1659964.91955844.1\tCACCACTTTTCCAAATTCGCCTTCTCCTAGAGTTTTTCCAAGAACCAAGTTCTTCCGAGGGAATTCCCACTTTGGATCCTCCTGTCTCTTGTAGGTTTCA\t1,51\tSRR1659964.91955844.2\tAAGGCGGCAGGTTAAACTCTTAGAAGAGAAGAATACCATGTATATGCAGAATACTGTCAGTCTAGAGGAAGAGTTAAGAAAGGCCAACGCAGCGCGAAGTC\t0,70\t\tNA\t(ENST00000355710.7,2449,RC);(ENST00000340058.5,2397,RC)\t(ENST00000307602.8,1199,FW);(ENST00000527306.1,1185,FW)\n+SPLIT\tSRR1659964.92391228.1\tGTGGTTGATCCTCCATCACCACGAAATCCTTGGTCTCTAATCAAGTCCTGTTCTGATTTAAGTACATTGAGTTCTTTCTGAAGTTTATCATTTTCACTTGG\t0,16\tSRR1659964.92391228.2\tCAAGAACAGTTGATTTTGGATCACTTACCATCTGTAACAAAGGAATCATCACTTAGAGCAACTCAACCAAGTGAAAATGATAAACTTCAGAAAGAACTCA\t0,69\tsplitat=(0,47)\t(ENST00000288602.10,1248,RC);(ENST00000497784.1,1222,RC)\t(ENST00000356239.7,3432,FW);(ENST00000493453.1,3419,FW);(ENST00000358100.6,3199,FW);(ENST00000359028.6,3232,FW);(ENST00000619023.4,3407,FW)\n+SPLIT\tSRR1659964.92712663.1\tCTGGAGACAGGCTCAGGATGTCCTCAGACAGGTCAGGGTCTAAAGTCAAGGGACCAGTGCCATTCCAGAATGGACTCTGACAGTAAGAATGAATTTGGTGG\t0,70\tSRR1659964.92712663.2\tCTTGTAAGATGCGGAAGACTCAGATTTTAGAGACCAAGTGCGTTTCAGAAGAGGGCTGAGGATTGGGTGCAAGGAGTTGGTGTTGATGGAGGAGCAGGACG\t13,39\tsplitat=(1,70)\t(ENST00000471323.1,293,RC);(ENST00000592353.1,280,RC)\t(ENST00000486389.5,665,FW);(ENST00000485128.5,81,FW);(ENST00000252984.11,69,FW);(ENST00000468004.5,16,FW)\n+PAIR\tSRR1659964.92697415.1\tTTTCACGTTAGTTAGTGAGCCAGGTAATGAGGCAGGGGGGGTAGCAGACAAACCTGTGGTTGATCCTCCATCACCACGAAATCCTTGGTCTCTAATCAAGT\t0,70\tSRR1659964.92697415.2\tTTTCTTTTGAAAATATGACTGTTGGAGAAGAAAGTAAGCAAGAACAGTTGATTTTGGATCACTTACCATCTGTAACAAAGGAATCATCACTTAGAGCAACT\t0,70\t\tNA\t(ENST00000288602.10,1303,RC);(ENST00000497784.1,1277,RC)\t(ENST00000356239.7,3394,FW);(ENST00000493453.1,3381,FW);(ENST00000358100.6,3161,FW);(ENST00000359028.6,3194,FW);(ENST00000619023.4,3369,FW)\n+SPLIT\tSRR1659964.93210744.1\tGCTCCCTCACCCAGTTCTCGCTTCAGCACGATGTCTCTCCTCTTAATGTGCTGCACATCTGCTATTCTCCCAATGGGCATGGCGTGCTCTTCAGGCGGGG\t0,26\tSRR1659964.93210744.2\tTGAACCCCCGGCACTCCGTGGATTTCAAACAGTCCAGGCTCTCCGAGGACGGGCTGCATAGGGAAGGGAAGCCCATCAACCTCTCTCATCGGGAAGACCTG\t0,70\tsplitat=(0,57)\t(ENST00000394480.6,1965,RC);(ENST00000629765.2,1659,RC);(ENST00000626019.2,1643,RC);(ENST00000557856.5,1643,RC);(ENST00000542733.6,1509,RC);(ENST00000558676.5,1645,RC);(ENST00000355254.6,1925,RC);(ENST00000360948.6,1949,RC);(ENST00000357724.6,1925,RC)\t(ENST00000396373.8,1110,FW)\n+PAIR\tSRR1659964.93221749.1\tCTTTCACGTTAGTTAGTGAGCCAGGTAATGAGGCAGGGGGGGTAGCAGACAAACCTGTGGTTGATCCTCCATCACCACGAAATCCTTGGTCTCTAATCA\t0,68\tSRR1659964.93221749.2\tTGACTGTTGGAGAAGAAAGTAAGCAAGAACAGTTGATTTTGGATCACTTACCATCTGTAACAAAGGAATCATCACTTAGAGCAACTCAACCAAGTGAAAAT\t0,70\t\tNA\t(ENST00000288602.10,1304,RC);(ENST00000497784.1,1278,RC)\t(ENST00000356239.7,3409,FW);(ENST00000493453.1,3396,FW);(ENST00000358100.6,3176,FW);(ENST00000359028.6,3209,FW);(ENST00000619023.4,3384,FW)\n+SPLIT\tSRR1659964.93330163.1\tATGTGCTCATGCTGCAGGTTGGTGAGCAGCTCGGCCTCCCTCTGGAAATCCTTCCGGGCAGCCAGGGTGGGATCCTTCAGGGCCTTCACAGCCACAAGCAT\t0,70\tSRR1659964.93330163.2\tCATCATGGTCTCTGTCTCCCCGCCTGAAGAGCACGCCATGCCCATTGGGAGAATAGCAGATGTGCAGCACATTAAGAGGAGAGACATCGTGCTGAAGCG\t0,28\tsplitat=(1,59)\t(ENST00000394480.6,2121,RC);(ENST00000629765.2,1815,RC);(ENST00000626019.2,1799,RC);(ENST00000557856.5,1799,RC);(ENST00000542733.6,1665,RC);(ENST00000558676.5,1801,RC);(ENST00000355254.6,2081,RC);(ENST00000360948.6,2105,RC);(ENST00000357724.6,2081,RC)\t(ENST00000396373.8,1225,FW)\n+SPLIT\tSRR1659964.93510014.1\tCTTGACTTTGACAATGACCTTGCCAGCCCCAGCCCCACTGAGGCAAGGGCCCCCGTCCCCTGTCACCAACAGCGAGCTGGGGAAAGCAGAGAGCATCAG\t0,23\tSRR1659964.93510014.2\tTCGGAGAGCTCCAGTGAGTCCAGCTCCTCTGACAGCGAAGACTCCGAAACAGCATCTGCATTGCCGGGACCGGATATGAGCATGAAACCTAGTGCCGCCCT\t0,19\tsplitat=(1,50)\t(ENST00000537011.5,745,RC);(ENST00000333756.4,434,RC);(ENST00000614490.4,830,RC)\t(ENST00000360016.9,2397,FW)\n' 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| diff -r 552ef00aba90 -r 2754990eb583 test-data/hg38_F.fq.gz |
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| Binary file test-data/hg38_F.fq.gz has changed |
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| diff -r 552ef00aba90 -r 2754990eb583 test-data/hg38_R.fq.gz |
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| Binary file test-data/hg38_R.fq.gz has changed |
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| diff -r 552ef00aba90 -r 2754990eb583 test-data/hg38_transcripts.fa --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/hg38_transcripts.fa Tue Sep 05 03:25:35 2017 -0400 |
| [ |
| b'@@ -0,0 +1,568 @@\n+>ENST00000394236.7 cdna:known chromosome:GRCh38:3:93873033:93974066:-1 gene:ENSG00000184500.14 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PROS1 description:protein S (alpha) [Source:HGNC Symbol;Acc:HGNC:9456]\n+AAAAGCAGCAACTAGGGAGCTGGTGAAGAAGGATGTCTCAGCAGTGTTTACTAGGCCTCCAACACTAGAGCCCATCCCCCAGCTCCGAAAAGCTTCCTGGAAATGTCCTTGTTATCACTTCCCCTCTCGGGCTGGGCGCTGGGAGCGGGCGGTCTCCTCCGCCCCCGGCTGTTCCGCCGAGGCTCGCTGGGTCGCTGGCGCCGCCGCGCAGCACGGCTCAGACCGAGGCGCACAGGCTCGCAGCTCCGCGGCGCCTAGCGCTCCGGTCCCCGCCGCGACGCGCCACCGTCCCTGCCGGCGCCTCCGCGCGCTTCGAAATGAGGGTCCTGGGTGGGCGCTGCGGGGCGCTGCTGGCGTGTCTCCTCCTAGTGCTTCCCGTCTCAGAGGCAAACTTTTTGTCAAAGCAACAGGCTTCACAAGTCCTGGTTAGGAAGCGTCGTGCAAATTCTTTACTTGAAGAAACCAAACAGGGTAATCTTGAAAGAGAATGCATCGAAGAACTGTGCAATAAAGAAGAAGCCAGGGAGGTCTTTGAAAATGACCCGGAAACGGATTATTTTTATCCAAAATACTTAGTTTGTCTTCGCTCTTTTCAAACTGGGTTATTCACTGCTGCACGTCAGTCAACTAATGCTTATCCTGACCTAAGAAGCTGTGTCAATGCCATTCCAGACCAGTGTAGTCCTCTGCCATGCAATGAAGATGGATATATGAGCTGCAAAGATGGAAAAGCTTCTTTTACTTGCACTTGTAAACCAGGTTGGCAAGGAGAAAAGTGTGAATTTGACATAAATGAATGCAAAGATCCCTCAAATATAAATGGAGGTTGCAGTCAAATTTGTGATAATACACCTGGAAGTTACCACTGTTCCTGTAAAAATGGTTTTGTTATGCTTTCAAATAAGAAAGATTGTAAAGATGTGGATGAATGCTCTTTGAAGCCAAGCATTTGTGGCACAGCTGTGTGCAAGAACATCCCAGGAGATTTTGAATGTGAATGCCCCGAAGGCTACAGATATAATCTCAAATCAAAGTCTTGTGAAGATATAGATGAATGCTCTGAGAACATGTGTGCTCAGCTTTGTGTCAATTACCCTGGAGGTTACACTTGCTATTGTGATGGGAAGAAAGGATTCAAACTTGCCCAAGATCAGAAGAGTTGTGAGGTTGTTTCAGTGTGCCTTCCCTTGAACCTTGACACAAAGTATGAATTACTTTACTTGGCGGAGCAGTTTGCAGGGGTTGTTTTATATTTAAAATTTCGTTTGCCAGAAATCAGCAGATTTTCAGCAGAATTTGATTTCCGGACATATGATTCAGAAGGCGTGATACTGTACGCAGAATCTATCGATCACTCAGCGTGGCTCCTGATTGCACTTCGTGGTGGAAAGATTGAAGTTCAGCTTAAGAATGAACATACATCCAAAATCACAACTGGAGGTGATGTTATTAATAATGGTCTATGGAATATGGTGTCTGTGGAAGAATTAGAACATAGTATTAGCATTAAAATAGCTAAAGAAGCTGTGATGGATATAAATAAACCTGGACCCCTTTTTAAGCCGGAAAATGGATTGCTGGAAACCAAAGTATACTTTGCAGGATTCCCTCGGAAAGTGGAAAGTGAACTCATTAAACCGATTAACCCTCGTCTAGATGGATGTATACGAAGCTGGAATTTGATGAAGCAAGGAGCTTCTGGAATAAAGGAAATTATTCAAGAAAAACAAAATAAGCATTGCCTGGTTACTGTGGAGAAGGGCTCCTACTATCCTGGTTCTGGAATTGCTCAATTTCACATAGATTATAATAATGTATCCAGTGCTGAGGGTTGGCATGTAAATGTGACCTTGAATATTCGTCCATCCACGGGCACTGGTGTTATGCTTGCCTTGGTTTCTGGTAACAACACAGTGCCCTTTGCTGTGTCCTTGGTGGACTCCACCTCTGAAAAATCACAGGATATTCTGTTATCTGTTGAAAATACTGTAATATATCGGATACAGGCCCTAAGTCTATGTTCCGATCAACAATCTCATCTGGAATTTAGAGTCAACAGAAACAATCTGGAGTTGTCGACACCACTTAAAATAGAAACCATCTCCCATGAAGACCTTCAAAGACAACTTGCCGTCTTGGACAAAGCAATGAAAGCAAAAGTGGCCACATACCTGGGTGGCCTTCCAGATGTTCCATTCAGTGCCACACCAGTGAATGCCTTTTATAATGGCTGCATGGAAGTGAATATTAATGGTGTACAGTTGGATCTGGATGAAGCCATTTCTAAACATAATGATATTAGAGCTCACTCATGTCCATCAGTTTGGAAAAAGACAAAGAATTCTTAAGGCATCTTTTCTCTGCTTATAATACCTTTTCCTTGTGTGTAATTATACTTATGTTTCAATAACAGCTGAAGGGTTTTATTTACAATGTGCAGTCTTTGATTATTTTGTGGTCCTTTCCTGGGATTTTTAAAAGGTCCTTTGTCAAGGAAAAAAATTCTGTTGTGATATAAATCACAGTAAAGAAATTCTTACTTCTCTTGCTATCTAAGAATAGTGAAAAATAACAATTTTAAATTTGAATTTTTTTCCTACAAATGACAGTTTCAATTTTTGTTTGTAAAACTAAATTTTAATTTTATCATCATGAACTAGTGTCTAAATACCTATGTTTTTTTCAGAAAGCAAGGAAGTAAACTCAAACAAAAGTGCGTGTAATTAAATACTATTAATCATAGGCAGATACTATTTTGTTTATGTTTTTGTTTTTTTCCTGATGAAGGCAGAAGAGATGGTGGTCTATTAAATATGAATTGAATGGAGGGTCCTAATGCCTTATTTCAAAACAATTCCTCAGGGGGAACAGCTTTGGCTTCATCTTTCTCTTGTGTGGCTTCACATTTAAACCAGTATCTTTATTGAATTAGAAAACAAGTGGGACATATTTTCCTGAGAGCAGCACAGGAATCTTCTTCTTGGCAGCTGCAGTCTGTCAGGATGAGATATCAGATTAGGTTGGATAGGTGGGGAAATCTGAAGTGGGTACATTTTTTAAATTTTGCTGTGTGGGTCACACAAGGTCTACATTACAAAAGACAGAATTCAGGGATGGAAAGGAGAATGAACAAATGTGGGAGTTCATAGTTTTCCTTGAATCCAACTTTTAATTACCAGAGTAAGTTGCCAAAATGTGATTGTTGAAGTACAAAAGGAACTATGAAAACCAGAACAAATTTTAACAAAAGGACAACCACAGAGGGATATAGTGAATATCGTATCATTGTAATCAAAGAAGTAAGGAGGTAAGATTGCCACGTGCCTGCTGGTACTGTGATGCATTTCAAGTGGCAGTTTTATCACGTTTGAATCTACCATTCATAGCCAGATGTGTATCAGATGTTTCACTGACAGTTTTTAACAATAAATTCTTTTCACTGTATTTTATATCACTTATAATAAATCGGTGTATAATTTTAAAATGCATGTGAATATCTTTATTATATCAACTGTTTGAATAAAACAAAATTACATAATAGACATTTAACTCTTCATACA\n+>ENST00000407433.5 cdna:known chromosome:GRCh38:3:93873109:93958754:-1 gene:ENSG00000184500.14 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PROS1 de'..b'GCTGTACGTCCATGCCCTGCGGGACGCCCCTGAGGAGGTGCCCAGCTTCCGCCTGGGCCAGCATCTCTACGGCACGTACCGCACACGGCTGCATGAGAACAACTGGATCTGCATCCAGGAGGACACCGGCCTCCTCTACCTTAACCGGAGCCTGGACCATAGCTCCTGGGAGAAGCTCAGTGTCCGCAACCGCGGCTTTCCCCTGCTCACCGTCTACCTCAAGGTCTTCCTGTCACCCACATCCCTTCGTGAGGGCGAGTGCCAGTGGCCAGGCTGTGCCCGCGTATACTTCTCCTTCTTCAACACCTCCTTTCCAGCCTGCAGCTCCCTCAAGCCCCGGGAGCTCTGCTTCCCAGAGACAAGGCCCTCCTTCCGCATTCGGGAGAACCGACCCCCAGGCACCTTCCACCAGTTCCGCCTGCTGCCTGTGCAGTTCTTGTGCCCCAACATCAGCGTGGCCTACAGGCTCCTGGAGGGTGAGGGTCTGCCCTTCCGCTGCGCCCCGGACAGCCTGGAGGTGAGCACGCGCTGGGCCCTGGACCGCGAGCAGCGGGAGAAGTACGAGCTGGTGGCCGTGTGCACCGTGCACGCCGGCGCGCGCGAGGAGGTGGTGATGGTGCCCTTCCCGGTGACCGTGTACGACGAGGACGACTCGGCGCCCACCTTCCCCGCGGGCGTCGACACCGCCAGCGCCGTGGTGGAGTTCAAGCGGAAGGAGGACACCGTGGTGGCCACGCTGCGTGTCTTCGATGCAGACGTGGTACCTGCATCAGGGGAGCTGGTGAGGCGGTACACAAGCACGCTGCTCCCCGGGGACACCTGGGCCCAGCAGACCTTCCGGGTGGAACACTGGCCCAACGAGACCTCGGTCCAGGCCAACGGCAGCTTCGTGCGGGCGACCGTACATGACTATAGGCTGGTTCTCAACCGGAACCTCTCCATCTCGGAGAACCGCACCATGCAGCTGGCGGTGCTGGTCAATGACTCAGACTTCCAGGGCCCAGGAGCGGGCGTCCTCTTGCTCCACTTCAACGTGTCGGTGCTGCCGGTCAGCCTGCACCTGCCCAGTACCTACTCCCTCTCCGTGAGCAGGAGGGCTCGCCGATTTGCCCAGATCGGGAAAGTCTGTGTGGAAAACTGCCTGGCAGATCTCACAGGGGATGCAGTATCTGGCCGAGATGAAGCTCGTTCATCGGGACTTGGCAGCCAGAAACATCCTGGTAGCTGAGGGGCGGAAGATGAAGATTTCGGATTTCGGCTTGTCCCGAGATGTTTATGAAGAGGATTCCTACGTGAAGAGGAGCCAGGGTCGGATTCCAGTTAAATGGATGGCAATTGAATCCCTTTTTGATCATATCTACACCACGCAAAGTGATGTATGGTCTTTTGGTGTCCTGCTGTGGGAGATCGTGACCCTAGGGGGAAACCCCTATCCTGGGATTCCTCCTGAGCGGCTCTTCAACCTTCTGAAGACCGGCCACCGGATGGAGAGGCCAGACAACTGCAGCGAGGAGATGTACCGCCTGATGCTGCAATGCTGGAAGCAGGAGCCGGACAAAAGGCCGGTGTTTGCGGACATCAGCAAAGACCTGGAGAAGATGATGGTTAAGAGGAGAGACTACTTGGACCTTGCGGCGTCCACTCCATCTGACTCCCTGATTTATGACGACGGCCTCTCAGAGGAGGAGACACCGCTGGTGGACTGTAATAATGCCCCCCTCCCTCGAGCCCTCCCTTCCACATGGATTGAAAACAAACTCTATGGCATGTCAGACCCGAACTGGCCTGGAGAGAGTCCTGTACCACTCACGAGAGCTGATGGCACTAACACTGGGTTTCCAAGATATCCAAATGATAGTGTATATGCTAACTGGATGCTTTCACCCTCAGCGGCAAAATTAATGGACACGTTTGATAGTTAACATTTCTTTGTGAAAGGTAATGGACTCACAAGGGGAAGAAACATGCTGAGAATGGAAAGTCTACCGGCCCTTTCTTTGTGAACGTCACATTGGCCGAGCCGTGTTCAGTTCCCAGGTGGCAGACTCGTTTTTGGTAGTTTGTTTTAACTTCCAAGGTGGTTTTACTTCTGATAGCCGGTGATTTTCCCTCCTAGCAGACATGCCACACCGGGTAAGAGCTCTGAGTCTTAGTGGTTAAGCATTCCTTTCTCTTCAGTGCCCAGCAGCACCCAGTGTTGGTCTGTGTCCATCAGTGACCACCAACATTCTGTGTTCACATGTGTGGGTCCAACACTTACTACCTGGTGTATGAAATTGGACCTGAACTGTTGGATTTTTCTAGTTGCCGCCAAACAAGGCAAAAAAATTTAAACATGAAGCACACACACAAAAAAGGCAGTAGGAAAAATGCTGGCCCTGATGACCTGTCCTTATTCAGAATGAGAGACTGCGGGGGGGGCCTGGGGGTAGTGTCAATGCCCCTCCAGGGCTGGAGGGGAAGAGGGGCCCCGAGGATGGGCCTGGGCTCAGCATTCGAGATCTTGAGAATGATTTTTTTTAAATCATGCAACCTTTCCTTAGGAAGACATTTGGTTTTCATCATGATTAAGATGATTCCTAGATTTAGCACAATGGAGAGATTCCATGCCATCTTTACTATGTGGATGGTGGTATCAGGGAAGAGGGCTCACAAGACACATTTGTCCCCCGGGCCCACCACATCATCCTCACGTGTTCGGTACTGAGCAGCCACTACCCCTGATGAGAACAGTATGAAGAAAGGGGGCTGTTGGAGTCCCAGAATTGCTGACAGCAGAGGCTTTGCTGCTGTGAATCCCACCTGCCACCAGCCTGCAGCACACCCCACAGCCAAGTAGAGGCGAAAGCAGTGGCTCATCCTACCTGTTAGGAGCAGGTAGGGCTTGTACTCACTTTAATTTGAATCTTATCAACTTACTCATAAAGGGACAGGCTAGCTAGCTGTGTTAGAAGTAGCAATGACAATGACCAAGGACTGCTACACCTCTGATTACAATTCTGATGTGAAAAAGATGGTGTTTGGCTCTTATAGAGCCTGTGTGAAAGGCCCATGGATCAGCTCTTCCTGTGTTTGTAATTTAATGCTGCTACAAGATGTTTCTGTTTCTTAGATTCTGACCATGACTCATAAGCTTCTTGTCATTCTTCATTGCTTGTTTGTGGTCACAGATGCACAACACTCCTCCAGTCTTGTGGGGGCAGCTTTTGGGAAGTCTCAGCAGCTCTTCTGGCTGTGTTGTCAGCACTGTAACTTCGCAGAAAAGAGTCGGATTACCAAAACACTGCCTGCTCTTCAGACTTAAAGCACTGATAGGACTTAAAATAGTCTCATTCAAATACTGTATTTTATATAGGCATTTCACAAAAACAGCAAAATTGTGGCATTTTGTGAGGCCAAGGCTTGGATGCGTGTGTAATAGAGCCTTGTGGTGTGTGCGCACACACCCAGAGGGAGAGTTTGAAAAATGCTTATTGGACACGTAACCTGGCTCTAATTTGGGCTGTTTTTCAGATACACTGTGATAAGTTCTTTTACAAATATCTATAGACATGGTAAACTTTTGGTTTTCAGATATGCTTAATGATAGTCTTACTAAATGCAGAAATAAGAATAAACTTTCTCAAATTATTAAAAATGCCTACACAGTAAGTGTGAATTGCTGCAACAGGTTTGTTCTCAGGAGGGTAAGAACTCCAGGTCTAAACAGCTGACCCAGTGATGGGGAATTTATCCTTGACCAATTTATCCTTGACCAATAACCTAATTGTCTATTCCTGAGTTATAAAAGTCCCCATCCTTATTAGCTCTACTGGAATTTTCATACACGTAAATGCAGAAGTTACTAAGTATTAAGTATTACTGAGTATTAAGTAGTAATCTGTCAGTTATTAAAATTTGTAAAATCTATTTATGAAAGGTCATTAAACCAGATCATGTTCCTTTTTTTGTAATCAAGGTGACTAAGAAAATCAGTTGTGTAAATAAAATCATGTATC\n' 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