| Previous changeset 1:a03d87763f51 (2020-02-13) Next changeset 3:bff9a82d630d (2020-02-16) |
|
Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit f14f2bae2b27dc04e574803c7d4442a64cfe43e4" |
|
modified:
hyphy_gard.xml macros.xml |
| b |
| diff -r a03d87763f51 -r 728d5b0af60f hyphy_gard.xml --- a/hyphy_gard.xml Thu Feb 13 15:00:59 2020 -0500 +++ b/hyphy_gard.xml Fri Feb 14 16:43:58 2020 -0500 |
| [ |
| @@ -1,5 +1,5 @@ <?xml version="1.0"?> -<tool id="hyphy_gard" name="HyPhy-GARD" version="@VERSION@+galaxy0"> +<tool id="hyphy_gard" name="HyPhy-GARD" version="@VERSION@+galaxy1"> <description>Genetic Algorithm for Recombination Detection</description> <macros> <import>macros.xml</import> @@ -7,7 +7,7 @@ <expand macro="requirements"/> <command detect_errors="exit_code"><![CDATA[ ln -s '$input_file' gard_input.fa && - @HYPHY_INVOCATION@ gard + @HYPHYMPI@ gard --alignment ./gard_input.fa --type '$datatype.value' #if str($datatype.value) == 'Codon': |
| b |
| diff -r a03d87763f51 -r 728d5b0af60f macros.xml --- a/macros.xml Thu Feb 13 15:00:59 2020 -0500 +++ b/macros.xml Fri Feb 14 16:43:58 2020 -0500 |
| [ |
| @@ -80,6 +80,7 @@ <yield/> </requirements> </xml> + <token name="@HYPHYMPI@">mpirun -np \${GALAXY_SLOTS:-1} HYPHYMPI</token> <token name="@HYPHY_ENVIRONMENT@"><![CDATA[export HYPHY=`which hyphy` && export HYPHY_PATH=`dirname \$HYPHY` && export HYPHY_LIB=`readlink -f \$HYPHY_PATH/../lib/hyphy` &&]]></token> |