Repository 'tool_factory_2'
hg clone https://toolshed.g2.bx.psu.edu/repos/fubar/tool_factory_2

Changeset 16:0027d2f66096 (2015-01-28)
Previous changeset 15:dd6cf2ddaac7 (2015-01-28) Next changeset 17:a584ff2f7554 (2015-02-01)
Commit message:
Deleted selected files
removed:
tool_test_output.html
b
diff -r dd6cf2ddaac7 -r 0027d2f66096 tool_test_output.html
--- a/tool_test_output.html Wed Jan 28 19:28:32 2015 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
[
b'@@ -1,356 +0,0 @@\n-<!DOCTYPE html>\n-<html lang="en">\n-  <head>\n-    <meta charset="utf-8">\n-    <meta http-equiv="X-UA-Compatible" content="IE=edge">\n-    <meta name="viewport" content="width=device-width, initial-scale=1">\n-    <title>Tool Test Results (powered by Planemo)</title>\n-\n-    <!-- Bootstrap -->\n-    <style>/*!\n- * Bootstrap v3.3.1 (http://getbootstrap.com)\n- * Copyright 2011-2014 Twitter, Inc.\n- * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)\n- *//*! normalize.css v3.0.2 | MIT License | git.io/normalize */html{font-family:sans-serif;-webkit-text-size-adjust:100%;-ms-text-size-adjust:100%}body{margin:0}article,aside,details,figcaption,figure,footer,header,hgroup,main,menu,nav,section,summary{display:block}audio,canvas,progress,video{display:inline-block;vertical-align:baseline}audio:not([controls]){display:none;height:0}[hidden],template{display:none}a{background-color:transparent}a:active,a:hover{outline:0}abbr[title]{border-bottom:1px dotted}b,strong{font-weight:700}dfn{font-style:italic}h1{margin:.67em 0;font-size:2em}mark{color:#000;background:#ff0}small{font-size:80%}sub,sup{position:relative;font-size:75%;line-height:0;vertical-align:baseline}sup{top:-.5em}sub{bottom:-.25em}img{border:0}svg:not(:root){overflow:hidden}figure{margin:1em 40px}hr{height:0;-webkit-box-sizing:content-box;-moz-box-sizing:content-box;box-sizing:content-box}pre{overflow:auto}code,kbd,pre,samp{font-family:monospace,monospace;font-size:1em}button,input,optgroup,select,textarea{margin:0;font:inherit;color:inherit}button{overflow:visible}button,select{text-transform:none}button,html input[type=button],input[type=reset],input[type=submit]{-webkit-appearance:button;cursor:pointer}button[disabled],html input[disabled]{cursor:default}button::-moz-focus-inner,input::-moz-focus-inner{padding:0;border:0}input{line-height:normal}input[type=checkbox],input[type=radio]{-webkit-box-sizing:border-box;-moz-box-sizing:border-box;box-sizing:border-box;padding:0}input[type=number]::-webkit-inner-spin-button,input[type=number]::-webkit-outer-spin-button{height:auto}input[type=search]{-webkit-box-sizing:content-box;-moz-box-sizing:content-box;box-sizing:content-box;-webkit-appearance:textfield}input[type=search]::-webkit-search-cancel-button,input[type=search]::-webkit-search-decoration{-webkit-appearance:none}fieldset{padding:.35em .625em .75em;margin:0 2px;border:1px solid silver}legend{padding:0;border:0}textarea{overflow:auto}optgroup{font-weight:700}table{border-spacing:0;border-collapse:collapse}td,th{padding:0}/*! Source: https://github.com/h5bp/html5-boilerplate/blob/master/src/css/main.css */@media print{*,:before,:after{color:#000!important;text-shadow:none!important;background:transparent!important;-webkit-box-shadow:none!important;box-shadow:none!important}a,a:visited{text-decoration:underline}a[href]:after{content:" (" attr(href) ")"}abbr[title]:after{content:" (" attr(title) ")"}a[href^="#"]:after,a[href^="javascript:"]:after{content:""}pre,blockquote{border:1px solid #999;page-break-inside:avoid}thead{display:table-header-group}tr,img{page-break-inside:avoid}img{max-width:100%!important}p,h2,h3{orphans:3;widows:3}h2,h3{page-break-after:avoid}select{background:#fff!important}.navbar{display:none}.btn>.caret,.dropup>.btn>.caret{border-top-color:#000!important}.label{border:1px solid #000}.table{border-collapse:collapse!important}.table td,.table th{background-color:#fff!important}.table-bordered th,.table-bordered td{border:1px solid #ddd!important}}@font-face{font-family:\'Glyphicons Halflings\';src:url(../fonts/glyphicons-halflings-regular.eot);src:url(../fonts/glyphicons-halflings-regular.eot?#iefix) format(\'embedded-opentype\'),url(../fonts/glyphicons-halflings-regular.woff) format(\'woff\'),url(../fonts/glyphicons-halflings-regular.ttf) format(\'truetype\'),url(../fonts/glyphicons-halflings-regular.svg#glyphicons_halflingsregular) format(\'svg\')}.glyphicon{position:relative;top:1px;display:inline-block;font-family:\'G'..b'l;\n-\t\tthis.command = null;\n-\t}\n-\tthis.problems = [];\n-\tvar outputProblems = data["data"]["output_problems"] || [];\n-\tvar executionProblem = data["data"]["execution_problem"];\n-\tthis.problems.push.apply(this.problems, outputProblems);\n-\tif(executionProblem) {\n-\t\tthis.problems.push(executionProblem);\n-\t}\n-\tthis.problemLog = data["data"]["problem_log"];\n-\tthis.passed = (this.status == "success");\n-}\n-\n-\n-// http://stackoverflow.com/questions/19491336/get-url-parameter-jquery\n-function getUrlParameter(sParam)\n-{\n-    var sPageURL = window.location.search.substring(1);\n-    var sURLVariables = sPageURL.split(\'&\');\n-    for (var i = 0; i < sURLVariables.length; i++) \n-    {\n-        var sParameterName = sURLVariables[i].split(\'=\');\n-        if (sParameterName[0] == sParam) \n-        {\n-            return sParameterName[1];\n-        }\n-    }\n-}\n-</script>\n-    <script>\n-      var testDataUrl = getUrlParameter("test_data_url");\n-      if(testDataUrl) {\n-      $.ajax(\n-        {\'url\': testDataUrl,\n-         \'type\': \'GET\',\n-        }\n-        )\n-        .success(function(content) { renderTestResults( $.parseJSON(content) ); })\n-        .failure(function() { alert("Failed to load test data.")} );\n-      } else {\n-        var test_data = {"tests": [{"data": {"status": "success", "inputs": {"input_formats": "tabular", "interp|interpreter": "python", "makeMode|include_deps": "yes", "makeMode|tool_version": "0.01", "make_TAB": "yes", "tool_name": "tf2_test", "input_tab": {"src": "hda", "id": "2891970512fa2d5a"}, "makeMode|help_text": "help text goes here", "interp|envpath": "system", "makeMode|tool_desc": "testing_tf2", "output_format": "tabular", "makeMode|make_Tool": "yes", "make_HTML": "yes"}, "job": {"inputs": {"input_tab": {"src": "hda", "id": "2891970512fa2d5a"}}, "update_time": "2015-01-29T00:25:34.597549", "tool_id": "rgTF2", "outputs": {"html_file": {"src": "hda", "id": "54f2a3a23292eb07"}, "output1": {"src": "hda", "id": "5729865256bc2525"}, "new_tool": {"src": "hda", "id": "8155e4b4bf1581ff"}}, "stdout": "", "command_line": "python /home/rlazarus/tools-iuc/tools/tool_factory_2/rgToolFactory2.py --script_path \\"/tmp/tmpIrcstV/job_working_directory/000/2/tmpLJbD4Y\\" --interpreter \\"python\\" --tool_name \\"tf2_test\\"  --user_email \\"test@bx.psu.edu\\" --citations \\"/tmp/tmpIrcstV/job_working_directory/000/2/tmp_KHuqv\\" --envshpath \\"system\\"  --output_tab \\"/tmp/tmpIrcstVfiles/000/dataset_2.dat\\" --output_format \\"tabular\\" --make_Tool \\"yes\\" --tool_desc \\"testing_tf2\\" --tool_version \\"0.01\\" --new_tool \\"/tmp/tmpIrcstVfiles/000/dataset_4.dat\\" --help_text \\"/tmp/tmpIrcstV/job_working_directory/000/2/tmp1FqjyF\\" --include_dependencies \\"yes\\" --output_dir \\"/tmp/tmpIrcstV/job_working_directory/000/2/dataset_3_files\\" --output_html \\"/tmp/tmpIrcstVfiles/000/dataset_3.dat\\" --make_HTML \\"yes\\" --input_formats \\"tabular\\" --input_tab \\"/tmp/tmpIrcstVfiles/000/dataset_1.dat,tf2_test_in.xls\\"", "exit_code": 0, "state": "ok", "create_time": "2015-01-29T00:25:30.494658", "params": {"input_formats": "\\"tabular\\"", "additional_parameters": "[]", "make_TAB": "\\"yes\\"", "interp": "{\\"interpreter\\": \\"python\\", \\"__current_case__\\": 1, \\"envpath\\": \\"system\\"}", "dbkey": "\\"hg17\\"", "makeMode": "{\\"tool_desc\\": \\"testing_tf2\\", \\"make_Tool\\": \\"yes\\", \\"tool_version\\": \\"0.01\\", \\"citations\\": [], \\"include_deps\\": \\"yes\\", \\"__current_case__\\": 0, \\"help_text\\": \\"help text goes here\\"}", "dynScript": "\\"\\"", "edit_params": "\\"no\\"", "output_format": "\\"tabular\\"", "chromInfo": "\\"/home/rlazarus/galaxy/tool-data/shared/ucsc/chrom/hg17.len\\"", "tool_name": "\\"tf2_test\\"", "make_HTML": "\\"yes\\""}, "stderr": "", "job_metrics": [], "model_class": "Job", "id": "5729865256bc2525"}}, "id": "functional.test_toolbox.TestForTool_rgTF2.test_tool_000000", "has_data": true}], "version": "0.1", "summary": {"num_skips": 0, "num_errors": 0, "num_failures": 0, "num_tests": 1}};\n-        renderTestResults(test_data);\n-      }\n-    </script>\n-  </body>\n-</html>\n'