| Previous changeset 2:98961914308d (2014-06-25) |
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Commit message:
Uploaded |
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modified:
tool_dependencies.xml vcfannotate.xml |
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| diff -r 98961914308d -r 28459b837ef8 tool_dependencies.xml --- a/tool_dependencies.xml Wed Jun 25 16:34:28 2014 -0400 +++ b/tool_dependencies.xml Mon Sep 15 14:48:28 2014 -0400 |
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| @@ -1,6 +1,6 @@ <?xml version="1.0"?> <tool_dependency> - <package name="vcflib" version="86723982aa"> - <repository changeset_revision="a6826babf644" name="vcflib_86723982aa" owner="anton" toolshed="https://toolshed.g2.bx.psu.edu" /> + <package name="vcflib" version="8a5602bf07"> + <repository changeset_revision="bffe0495cd92" name="package_vcflib_8a5602bf07" owner="anton" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> </tool_dependency> |
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| diff -r 98961914308d -r 28459b837ef8 vcfannotate.xml --- a/vcfannotate.xml Wed Jun 25 16:34:28 2014 -0400 +++ b/vcfannotate.xml Mon Sep 15 14:48:28 2014 -0400 |
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| @@ -1,12 +1,12 @@ <tool id="vcfannotate" name="VCFannotate:" version="0.0.2"> <requirements> - <requirement type="package" version="86723982aa">vcflib</requirement> + <requirement type="package" version="8a5602bf07">vcflib</requirement> </requirements> <description>Intersect VCF records with BED annotations</description> <command>vcfannotate --key "${key_option}" -b "${bed_data}" "${input}" > "${out_file1}"</command> <inputs> <param format="vcf" name="input" type="data" label="Select VCF dataset"/> - <param name="bed_data" type="data" format="bed" label="BED datasets to itersect with"/> + <param name="bed_data" type="data" format="bed" label="Select BED dataset to itersect with"/> <param name="key_option" size="20" type="text" value="BED-features" label="Intersecting VCF records will be prefixed with this TAG within the INFO field" help="--key option"/> </inputs> <outputs> @@ -22,7 +22,7 @@ </tests> <help> -Intersect the records in the VCF file with targets provided in a BED file. Intersections are done on the reference sequences in the VCF file. +Intersect the records in the VCF file with intervals (features) provided in a BED file. Intersections are done on the reference sequences in the VCF file. ----- |