Repository 'blast2html'
hg clone https://toolshed.g2.bx.psu.edu/repos/jankanis/blast2html

Changeset 14:0b33898bba45 (2014-05-12)
Previous changeset 13:c2d63adb83db (2014-05-12) Next changeset 15:648b3b7437da (2014-05-12)
Commit message:
small bugfixes (one for python 3.4)
modified:
blast_html.py
b
diff -r c2d63adb83db -r 0b33898bba45 blast_html.py
--- a/blast_html.py Mon May 12 17:13:49 2014 +0200
+++ b/blast_html.py Mon May 12 17:32:01 2014 +0200
[
@@ -71,9 +71,9 @@
 @filter
 def alignment_pre(hsp):
     return (
-        "Query  {:>7s}  {}  {}\n".format(hsp['Hsp_query-from'], hsp.Hsp_qseq, hsp['Hsp_query-to']) +
+        "Query  {:>7s}  {}  {}\n".format(hsp['Hsp_query-from'].text, hsp.Hsp_qseq, hsp['Hsp_query-to'].text) +
         "       {:7s}  {}\n".format('', hsp.Hsp_midline) +
-        "Subject{:>7s}  {}  {}".format(hsp['Hsp_hit-from'], hsp.Hsp_hseq, hsp['Hsp_hit-to'])
+        "Subject{:>7s}  {}  {}".format(hsp['Hsp_hit-from'].text, hsp.Hsp_hseq, hsp['Hsp_hit-to'].text)
     )
 
 @filter('len')
@@ -105,7 +105,7 @@
 
     max_scale_labels = 10
 
-    templatename = 'visualise.html.jinja'
+    templatename = 'blast_html.html.jinja'
 
     def __init__(self, input):
         self.input = input