| Previous changeset 122:5f104d05aa23 (2014-07-31) Next changeset 124:6719353162b0 (2014-08-11) |
|
Commit message:
really fix python 2.6 array type code issue |
|
modified:
blast2html.py |
| b |
| diff -r 5f104d05aa23 -r 720efb818f1b blast2html.py --- a/blast2html.py Thu Jul 31 17:24:10 2014 +0200 +++ b/blast2html.py Thu Jul 31 18:40:28 2014 +0200 |
| [ |
| @@ -329,9 +329,10 @@ hsps = hit.Hit_hsps.Hsp # In python 2.6 array doesn't accept unicode type codes, but in 3.4 it requires them - cover = array(str('B'), [0]) * query_length + typecode_B = builtin_str('B') + cover = array(typecode_B, [0]) * query_length for hsp in hsps: - cover[hsp['Hsp_query-from']-1 : int(hsp['Hsp_query-to'])] = array(str('B'), [1]) * blastxml_len(hsp) + cover[hsp['Hsp_query-from']-1 : int(hsp['Hsp_query-to'])] = array(typecode_B, [1]) * blastxml_len(hsp) cover_count = cover.count(1) best_hsp = max(hsps, key=lambda h: h['Hsp_bit-score']) |