| Previous changeset 2:f6cd51710678 (2014-05-06) Next changeset 4:34211f5b83fd (2014-05-06) |
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Commit message:
undo trimming that broke the graphics summary |
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modified:
Blast output page example trimmed.html |
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| diff -r f6cd51710678 -r 9a8ac57e5680 Blast output page example trimmed.html --- a/Blast output page example trimmed.html Tue May 06 17:41:24 2014 +0200 +++ b/Blast output page example trimmed.html Tue May 06 17:47:16 2014 +0200 |
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| @@ -397,7 +397,22 @@ <h3>Distribution of 45 Blast Hits on the Query Sequence <a aria-expanded="false" role="button" aria-disabled="false" class="helplink jig-ncbitoggler ui-ncbitoggler ui-widget" title="Graphic summary help" id="grHelp" href="#"><span class="ui-ncbitoggler-master-text"><span>[?]</span></span> <span class="ui-icon ui-icon-triangle-1-e"></span></a></h3> -<!-- ARIA --> +<div class="ui-helper-reset" aria-live="assertive"> +<p aria-hidden="true" id="ovrInfo" class="helpbox ui-ncbitoggler-slave ui-ncbitoggler"> +An overview of the database sequences aligned to the query sequence is +shown. The score of each alignment is indicated by one of five +different colors, which divides the range of scores into five groups. +Multiple alignments on the same database sequence are connected +by a striped line. <span class="hl">Mousing over</span> a hit sequence causes the definition and score to be shown in the window at the top, +<span class="hl">clicking</span> on a hit sequence takes the user to the associated alignments. +New: +This graphic is an overview of database sequences aligned to the query sequence. +Alignments are color-coded by score, within one of five score ranges. +Multiple alignments on the same database sequence are connected by a dashed line. +<span class="hl">Mousing</span> over an alignment shows the alignment definition and score in the box at the top. +<span class="hl">Clicking</span> an alignment displays the alignment detail. +</p> +</div><!-- ARIA --> <center><input name="defline" size="85" value="Mouse-over to show defline and scores, click to show alignments" type="text"><table bordercolordark="#0000FF" bordercolorlight="#0000FF" border="1" cellpadding="10" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><table border="0" cellpadding="0" cellspacing="1"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td> <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/score.gif" height="40" width="500"></td> </tr></tbody></table> @@ -501,19 +516,19 @@ <div class="ui-helper-reset" aria-live="assertive"> <div aria-hidden="false" id="descrInfo" class="resBox ui-ncbitoggler-slave-open ui-widget ui-ncbitoggler"> <!-- legend to links to other resources --> - - - - +<a name="sort_mark"></a> -<!-- Indicates genbank, etc --> - - - - - - +<div id="debug">, Reading indexes 1-5, displaying indexes 1-5</div> +<input id="Rid" value="PHWP1JNZ014" type="hidden"> +<input id="useAlignDB" name="useAlignDB" value="" type="hidden"> +<input id="dbType" value="GenBank" type="hidden"><!-- Indicates genbank, etc --> +<input id="serviceType" value="plain" type="hidden"> +<input id="clientType" value="web" type="hidden"> +<input id="currQuery" value="" type="hidden"> +<input id="minDispAlnLen" value="2000" type="hidden"> +<input id="maxDispAlnLen" value="20000" type="hidden"> +<div class="hidden" id="dynHspTmpl"><div class="alnParLinks moreHsps" id="@moreHspsID@"><a class="gbd toolsCtr navNext" title="Load matches @segs@ out of @totalHSP@ for @accs@" onmouseover="scan(this)" ref="range=@segs@&currseq=@alnSeqGi@" onclick="ReadNextHSPSet(@argstring@);"><span>Load next set</span></a><a class="gbd toolsCtr navPrev" title="Go to previous match #@aln_prev_num@ for @accs@" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a></div></div> <div id="descriptions" class="blRes"> <!--<pre> --> <div class="cap">Sequences producing significant alignments:</div> @@ -529,7 +544,20 @@ <a href="#alignInfo" id="alnNav" class="toolsCtr alnNav" title="Go to alignments"><span>Alignments</span></a> <a aria-haspopup="true" aria-expanded="false" role="button" href="#dsDownload" minslct="1" class="jig-ncbipopper toolsCtr dnld dialog " data-jigconfig="hasArrow:'true',arrowDirection:'top'" id="dscDwnld" disabled="disabled" title="Download information for selected sequences"><span>Download</span></a> - <!-- dsDownload --> +<div style="top: -100px; left: -100px; display: none;" aria-hidden="true" aria-live="assertive" id="dsDownload" class="popDl ui-helper-reset ui-ncbipopper-wrapper ui-ncbipopper-basic"> +<div class=""><input name="dwn" checked="checked" id="dwFST" fstadwtype="complete" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFST">FASTA (complete sequence)</label></div> +<div class=""><input name="dwn" id="dwFSTAl" fstadwtype="range" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFSTAl">FASTA (aligned sequences)</label></div> +<div class=""><input name="dwn" id="dwGenBank" getgi="on" sbname="id" url="http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&rettype=gb&retmode=text" type="radio"><label class=" shownInl" for="dwGenBank">GenBank (complete sequence)</label></div> +<div><input name="dwn" id="dwHitText" url="Blast.cgi?RESULTS_FILE=on&RID=PHWP1JNZ014&FORMAT_TYPE=Text&FORMAT_OBJECT=Alignment&ALIGNMENT_VIEW=Tabular&CMD=Get" type="radio"><label class="shownInl" for="dwHitText">Hit Table (text)</label></div> +<div><input name="dwn" id="dwHitCsv" url="Blast.cgi?RESULTS_FILE=on&RID=PHWP1JNZ014&FORMAT_TYPE=CSV&FORMAT_OBJECT=Alignment&ALIGNMENT_VIEW=Tabular&CMD=Get" type="radio"><label class="shownInl" for="dwHitCsv">Hit Table (CSV)</label></div> +<div><input name="dwn" id="dwText" url="Blast.cgi?RESULTS_FILE=on&RID=PHWP1JNZ014&FORMAT_TYPE=Text&FORMAT_OBJECT=Alignment&CMD=Get" type="radio"><label class="shownInl" for="dwText">Text</label></div> +<div><input name="dwn" id="dwXML" url="Blast.cgi?RESULTS_FILE=on&RID=PHWP1JNZ014&FORMAT_TYPE=XML&FORMAT_OBJECT=Alignment&CMD=Get" type="radio"><label class="shownInl" for="dwXML">XML</label></div> +<div><input name="dwn" id="dwASN" url="Blast.cgi?RESULTS_FILE=on&RID=PHWP1JNZ014&FORMAT_TYPE=ASN.1&FORMAT_OBJECT=Alignment&CMD=Get" type="radio"><label class="shownInl" for="dwASN">ASN.1</label></div> +<div> +<button class="cfg" id="dw_cont">Continue</button> +<button class="cfg cnc">Cancel</button> +</div> +</div> <!-- dsDownload --> |