Repository 'phyml'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/phyml

Changeset 2:2bf47d57ebb5 (2020-06-22)
Previous changeset 1:034f76ead49a (2020-01-20) Next changeset 3:7157a5b34a68 (2023-10-23)
Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/phyml commit 61b727022bd1b24a8843830a9c5f34ef66835694"
modified:
phyml.xml
test-data/phylip_phyml_stats.txt
b
diff -r 034f76ead49a -r 2bf47d57ebb5 phyml.xml
--- a/phyml.xml Mon Jan 20 12:45:54 2020 -0500
+++ b/phyml.xml Mon Jun 22 18:37:56 2020 -0400
[
@@ -1,7 +1,10 @@
-<tool id="phyml" name="PhyML" version="3.3.20190321">
-    <description>Phylogeny software based on the maximum-likelihood</description>
+<tool id="phyml" name="PhyML" version="@VERSION@">
+    <description>Phylogeny software based on the maximum-likelihood method.</description>
+    <macros>
+        <token name="@VERSION@">3.3.20190909</token>
+    </macros>
     <requirements>
-        <requirement type="package" version="3.3.20190321">phyml</requirement>
+        <requirement type="package" version="@VERSION@">phyml</requirement>
     </requirements>
     <version_command>
         <![CDATA[ phyml --version ]]>
b
diff -r 034f76ead49a -r 2bf47d57ebb5 test-data/phylip_phyml_stats.txt
--- a/test-data/phylip_phyml_stats.txt Mon Jan 20 12:45:54 2020 -0500
+++ b/test-data/phylip_phyml_stats.txt Mon Jun 22 18:37:56 2020 -0400
b
@@ -1,13 +1,12 @@
 
  oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
-                                  ---  PhyML 3.3.20190321  ---                                             
+                                  ---  PhyML 3.3.20190909  ---                                             
                               http://www.atgc-montpellier.fr/phyml                                          
                              Copyright CNRS - Universite Montpellier                                 
  oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
 
 . Sequence filename:  phylip
 . Data set:  #1
-. Tree topology search:  SPRs
 . Initial tree:  BioNJ
 . Model of nucleotides substitution:  HKY85
 . Number of taxa:  7
@@ -33,7 +32,7 @@
 . Run ID: none
 . Random seed: 1458308600
 . Subtree patterns aliasing: no
-. Version: 3.3.20190321
+. Version: 3.3.20190909
 . Time used: 0h0m0s (0 seconds)
 
  oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo