| Previous changeset 10:69fd3011b1a9 (2018-12-10) Next changeset 12:62212df99efd (2018-12-10) |
|
Commit message:
blockclust workflows 1.1.0 |
|
modified:
blockclust_workflow.ga |
| b |
| diff -r 69fd3011b1a9 -r 1e6d0af8c450 blockclust_workflow.ga --- a/blockclust_workflow.ga Mon Dec 10 10:45:37 2018 -0500 +++ b/blockclust_workflow.ga Mon Dec 10 10:46:24 2018 -0500 |
| [ |
| b'@@ -2,41 +2,102 @@\n "a_galaxy_workflow": "true", \n "annotation": "", \n "format-version": "0.1", \n- "name": "BlockClustWorkflow", \n+ "name": "blockclust 1.1.0 complete", \n "steps": {\n "0": {\n "annotation": "", \n+ "content_id": null, \n+ "errors": null, \n "id": 0, \n "input_connections": {}, \n- "inputs": [\n- {\n- "description": "", \n- "name": "Input BAM file"\n- }\n- ], \n+ "inputs": [], \n+ "label": "blockclust_input", \n "name": "Input dataset", \n "outputs": [], \n "position": {\n- "left": 267, \n- "top": 257.5\n+ "left": 200, \n+ "top": 338\n }, \n- "tool_errors": null, \n "tool_id": null, \n- "tool_state": "{\\"name\\": \\"Input BAM file\\"}", \n+ "tool_state": "{}", \n "tool_version": null, \n "type": "data_input", \n- "user_outputs": []\n+ "uuid": "b6e23dd8-46ca-4bd6-87f3-2f6b741b459b", \n+ "workflow_outputs": [\n+ {\n+ "label": null, \n+ "output_name": "output", \n+ "uuid": "d8c12432-a0db-4cba-a815-aba6a2de9626"\n+ }\n+ ]\n }, \n "1": {\n "annotation": "", \n+ "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/samtools_sort/samtools_sort/2.0.2", \n+ "errors": null, \n "id": 1, \n "input_connections": {\n- "tool_mode|reads_bam": {\n+ "input1": {\n "id": 0, \n "output_name": "output"\n }\n }, \n- "inputs": [], \n+ "inputs": [\n+ {\n+ "description": "runtime parameter for tool Samtools sort", \n+ "name": "input1"\n+ }\n+ ], \n+ "label": null, \n+ "name": "Samtools sort", \n+ "outputs": [\n+ {\n+ "name": "output1", \n+ "type": "bam"\n+ }\n+ ], \n+ "position": {\n+ "left": 460, \n+ "top": 338\n+ }, \n+ "post_job_actions": {}, \n+ "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/samtools_sort/samtools_sort/2.0.2", \n+ "tool_shed_repository": {\n+ "changeset_revision": "f56bdb93ae58", \n+ "name": "samtools_sort", \n+ "owner": "devteam", \n+ "tool_shed": "toolshed.g2.bx.psu.edu"\n+ }, \n+ "tool_state": "{\\"__page__\\": null, \\"__rerun_remap_job_id__\\": null, \\"input1\\": \\"{\\\\\\"__class__\\\\\\": \\\\\\"RuntimeValue\\\\\\"}\\", \\"prim_key_cond\\": \\"{\\\\\\"prim_key_select\\\\\\": \\\\\\"\\\\\\", \\\\\\"__current_case__\\\\\\": 0}\\"}", \n+ "tool_version": "2.0.2", \n+ "type": "tool", \n+ "uuid": "327e9b59-6d4e-482e-bcdf-c7cc5d8505c9", \n+ "workflow_outputs": [\n+ {\n+ "label": null, \n+ "output_name": "output1", \n+ "uuid": "22295821-a765-4e6c-804f-6c710e26923f"\n+ }\n+ ]\n+ }, \n+ "2": {\n+ "annotation": "", \n+ "content_id": "toolshed.g2.bx.psu.edu/repos/rnateam/blockclust/blockclust/1.1.0", \n+ "errors": null, \n+ "id": 2, \n+ "input_connections": {\n+ "tool_mode|reads_bam": {\n+ "id": 1, \n+ "output_name": "output1"\n+ }\n+ }, \n+ "inputs": [\n+ {\n+ "description": "runtime parameter for tool BlockClust", \n+ "name": "tool_mode"\n+ }\n+ ], \n+ '..b' "uuid": "842f09a0-b91c-4a9b-a3a5-019f0fda1aba", \n+ "workflow_outputs": []\n }, \n- "7": {\n+ "8": {\n "annotation": "", \n- "id": 7, \n+ "content_id": "toolshed.g2.bx.psu.edu/repos/rnateam/blockclust/blockclust/1.1.0", \n+ "errors": null, \n+ "id": 8, \n "input_connections": {\n "tool_mode|clusters_bed": {\n- "id": 4, \n+ "id": 5, \n "output_name": "clusters"\n }, \n "tool_mode|cmsearch_out": {\n- "id": 6, \n+ "id": 7, \n "output_name": "outfile"\n }, \n "tool_mode|sim_tab_in": {\n- "id": 4, \n+ "id": 5, \n "output_name": "sim_tab_out"\n }\n }, \n- "inputs": [], \n+ "inputs": [\n+ {\n+ "description": "runtime parameter for tool BlockClust", \n+ "name": "tool_mode"\n+ }, \n+ {\n+ "description": "runtime parameter for tool BlockClust", \n+ "name": "tool_mode"\n+ }, \n+ {\n+ "description": "runtime parameter for tool BlockClust", \n+ "name": "tool_mode"\n+ }\n+ ], \n+ "label": null, \n "name": "BlockClust", \n "outputs": [\n {\n@@ -415,8 +593,8 @@\n }\n ], \n "position": {\n- "left": 2049, \n- "top": 433\n+ "left": 2639, \n+ "top": 338\n }, \n "post_job_actions": {\n "HideDatasetActionclusters": {\n@@ -450,12 +628,31 @@\n "output_name": "tags_bed"\n }\n }, \n- "tool_errors": null, \n- "tool_id": "testtoolshed.g2.bx.psu.edu/repos/rnateam/blockclust/blockclust/1.0.0", \n- "tool_state": "{\\"tool_mode\\": \\"{\\\\\\"cmsearch_out\\\\\\": null, \\\\\\"operation\\\\\\": \\\\\\"post\\\\\\", \\\\\\"clusters_bed\\\\\\": null, \\\\\\"__current_case__\\\\\\": 2, \\\\\\"sim_tab_in\\\\\\": null}\\", \\"__rerun_remap_job_id__\\": null, \\"mode\\": \\"{\\\\\\"cmsearch_out\\\\\\": null, \\\\\\"operation\\\\\\": \\\\\\"post\\\\\\", \\\\\\"clusters_bed\\\\\\": null, \\\\\\"__current_case__\\\\\\": 2, \\\\\\"sim_tab_in\\\\\\": null}\\", \\"__page__\\": 0}", \n- "tool_version": "1.0.0", \n+ "tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/blockclust/blockclust/1.1.0", \n+ "tool_shed_repository": {\n+ "changeset_revision": "aab6cf87b40a", \n+ "name": "blockclust", \n+ "owner": "rnateam", \n+ "tool_shed": "toolshed.g2.bx.psu.edu"\n+ }, \n+ "tool_state": "{\\"tool_mode\\": \\"{\\\\\\"cmsearch_out\\\\\\": {\\\\\\"__class__\\\\\\": \\\\\\"RuntimeValue\\\\\\"}, \\\\\\"operation\\\\\\": \\\\\\"post\\\\\\", \\\\\\"clusters_bed\\\\\\": {\\\\\\"__class__\\\\\\": \\\\\\"RuntimeValue\\\\\\"}, \\\\\\"__current_case__\\\\\\": 2, \\\\\\"sim_tab_in\\\\\\": {\\\\\\"__class__\\\\\\": \\\\\\"RuntimeValue\\\\\\"}}\\", \\"__rerun_remap_job_id__\\": null, \\"__page__\\": null}", \n+ "tool_version": "1.1.0", \n "type": "tool", \n- "user_outputs": []\n+ "uuid": "dfdaf591-1d6f-45f0-bf05-4fac5680155e", \n+ "workflow_outputs": [\n+ {\n+ "label": null, \n+ "output_name": "cluster_hclust", \n+ "uuid": "75860090-3020-4281-9887-b73389b9c207"\n+ }, \n+ {\n+ "label": null, \n+ "output_name": "cluster_dist", \n+ "uuid": "c749ddcc-628b-4e46-a61d-dfbe00901964"\n+ }\n+ ]\n }\n- }\n+ }, \n+ "tags": [], \n+ "uuid": "a60be50d-44e1-4fb5-90a0-3b849ceaf3e3"\n }\n\\ No newline at end of file\n' |