| Previous changeset 5:bbcf5f7f2af2 (2019-01-28) Next changeset 7:67c29afac85f (2019-03-17) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goseq commit 11d5198120837fa4eecb0bef8e2c04106eab63c2 |
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modified:
goseq.xml |
| b |
| diff -r bbcf5f7f2af2 -r 07f6832bdd4d goseq.xml --- a/goseq.xml Mon Jan 28 04:27:40 2019 -0500 +++ b/goseq.xml Sat Feb 09 09:07:48 2019 -0500 |
| b |
| @@ -1,11 +1,11 @@ -<tool id="goseq" name="goseq" version="1.32.0"> +<tool id="goseq" name="goseq" version="1.34.0"> <description>tests for overrepresented gene categories</description> <requirements> - <requirement type="package" version="1.32.0">bioconductor-goseq</requirement> - <requirement type="package" version="3.6.0">bioconductor-org.hs.eg.db</requirement> - <requirement type="package" version="3.6.0">bioconductor-org.dm.eg.db</requirement> - <requirement type="package" version="3.6.0">bioconductor-org.dr.eg.db</requirement> - <requirement type="package" version="3.6.0">bioconductor-org.mm.eg.db</requirement> + <requirement type="package" version="1.34.0">bioconductor-goseq</requirement> + <requirement type="package" version="3.7.0">bioconductor-org.hs.eg.db</requirement> + <requirement type="package" version="3.7.0">bioconductor-org.dm.eg.db</requirement> + <requirement type="package" version="3.7.0">bioconductor-org.dr.eg.db</requirement> + <requirement type="package" version="3.7.0">bioconductor-org.mm.eg.db</requirement> <requirement type="package" version="0.7.8">r-dplyr</requirement> <requirement type="package" version="3.1.0">r-ggplot2</requirement> <requirement type="package" version="1.6.0">r-optparse</requirement> @@ -188,7 +188,7 @@ <output name="wallenius_tab"> <assert_contents> <has_text_matching expression="category.*over_represented_pvalue.*under_represented_pvalue.*numDEInCat.*numInCat.*term.*ontology.*p.adjust.over_represented.*p.adjust.under_represented" /> - <has_text_matching expression="GO:0005576.*5.2" /> + <has_text_matching expression="GO:0005576.*8.8" /> </assert_contents> </output> </test> @@ -203,7 +203,7 @@ <output name="wallenius_tab"> <assert_contents> <has_text_matching expression="category.*over_represented_pvalue.*under_represented_pvalue.*numDEInCat.*numInCat.*term.*ontology.*p.adjust.over_represented.*p.adjust.under_represented" /> - <has_text_matching expression="GO:0031324.*0.12" /> + <has_text_matching expression="GO:0031324.*0.50" /> </assert_contents> </output> </test> |