Repository 'bcftools_view'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/bcftools_view

Changeset 17:38d75661c235 (2022-08-19)
Previous changeset 16:e15e4acae7ef (2022-07-23) Next changeset 18:3ca3de4e5291 (2022-09-20)
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 407e1d8f4dd1a60623783331926098f7f5624841
modified:
bcftools_view.xml
b
diff -r e15e4acae7ef -r 38d75661c235 bcftools_view.xml
--- a/bcftools_view.xml Sat Jul 23 13:47:28 2022 +0000
+++ b/bcftools_view.xml Fri Aug 19 20:04:14 2022 +0000
b
@@ -244,7 +244,13 @@
             <param name="known_or_novel" value="--novel" />
             <param name="private" value="--exclude-private" />
             <param name="samples" value="NA00003" />
-            <param name="regions" value="20,Y" />
+            <conditional name="regions">
+                <param name="regions_src" value="regions"/>
+                <repeat name="regions">
+                    <param name="chrom" value="Y" />
+                    <param name="start" value="20" />
+                </repeat>
+            </conditional>
             <param name="output_type" value="v" />
             <output name="output_file">
                 <assert_contents>
@@ -252,6 +258,9 @@
                     <not_has_text text="rs6111385" />
                 </assert_contents>
             </output>
+            <assert_command>
+                <has_text text="--regions 'Y:20-'"/>
+            </assert_command>
         </test>
         <test>
             <param name="input_file" ftype="vcf" value="view.vcf" />