| Previous changeset 3:1faa7e3c94ff (2024-04-04) |
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Commit message:
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/slice_image/ commit c86a1b93cb7732f7331a981d13465653cc1a2790 |
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modified:
slice_image.py slice_image.xml |
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| diff -r 1faa7e3c94ff -r a72590196440 slice_image.py --- a/slice_image.py Thu Apr 04 15:26:38 2024 +0000 +++ b/slice_image.py Wed Apr 24 08:13:20 2024 +0000 |
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| @@ -3,6 +3,7 @@ import random import warnings +import giatools.io import numpy as np import skimage.feature import skimage.io @@ -15,7 +16,7 @@ if seed is not None: random.seed(seed) - img_raw = skimage.io.imread(input_file) + img_raw = giatools.io.imread(input_file) if len(img_raw.shape) == 2: img_raw = np.expand_dims(img_raw, 3) |
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| diff -r 1faa7e3c94ff -r a72590196440 slice_image.xml --- a/slice_image.xml Thu Apr 04 15:26:38 2024 +0000 +++ b/slice_image.xml Wed Apr 24 08:13:20 2024 +0000 |
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| @@ -1,4 +1,4 @@ -<tool id="ip_slice_image" name="Slice image into patches" version="0.3-3"> +<tool id="ip_slice_image" name="Slice image into patches" version="0.3-4" profile="20.05"> <description></description> <macros> <import>creators.xml</import> @@ -14,10 +14,11 @@ <xref type="bio.tools">galaxy_image_analysis</xref> </xrefs> <requirements> - <requirement type="package" version="0.14.2">scikit-image</requirement> - <requirement type="package" version="1.15.4">numpy</requirement> - <requirement type="package" version="1.1.0">scipy</requirement> - <requirement type="package" version="0.15.1">tifffile</requirement> + <requirement type="package" version="0.18.1">scikit-image</requirement> + <requirement type="package" version="1.23.3">numpy</requirement> + <requirement type="package" version="1.13.0">scipy</requirement> + <requirement type="package" version="2020.10.1">tifffile</requirement> + <requirement type="package" version="0.1">giatools</requirement> </requirements> <command detect_errors="aggressive"><![CDATA[ |