| Previous changeset 7:4771f8bc8fa4 (2021-11-30) Next changeset 9:1021f52c9e11 (2022-01-17) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 017e25729a8ffd3722e87dfdf10ff4fd99c0babd" |
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modified:
macros.xml nextalign.xml |
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| diff -r 4771f8bc8fa4 -r 1c785a6b4d90 macros.xml --- a/macros.xml Tue Nov 30 09:21:44 2021 +0000 +++ b/macros.xml Mon Dec 13 17:02:52 2021 +0000 |
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| @@ -1,6 +1,6 @@ <macros> <!-- same version number is used for nextclade and nextalign releases, even though they are distinct tools --> - <token name="@TOOL_VERSION@">1.5.1</token> + <token name="@TOOL_VERSION@">1.7.0</token> <xml name="citations"> <citations> <citation type="bibtex">@online{nextclade, |
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| diff -r 4771f8bc8fa4 -r 1c785a6b4d90 nextalign.xml --- a/nextalign.xml Tue Nov 30 09:21:44 2021 +0000 +++ b/nextalign.xml Mon Dec 13 17:02:52 2021 +0000 |
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| @@ -34,10 +34,6 @@ --nuc-min-seeds '${nuc_min_seeds}' --nuc-seed-spacing '${nuc_seed_spacing}' --nuc-mismatches-allowed '${nuc_mismatches_allowed}' - --aa-seed-length '${aa_seed_length}' - --aa-min-seeds '${aa_min_seeds}' - --aa-seed-spacing '${aa_seed_spacing}' - --aa-mismatches-allowed '${aa_mismatches_allowed}' ]]></command> <inputs> <expand macro="reference"/> @@ -97,16 +93,6 @@ <param argument="--nuc-mismatches-allowed" type="integer" value="3" min="0" label="Maximum number of mismatching nucleotides." help="Maximum number of mismatching nucleotides allowed for a seed to be considered a match." /> - <param argument="--aa-seed-length" type="integer" value="12" min="1" - label="Seed length for aminoacid alignment" /> - <param argument="--aa-min-seeds" type="integer" value="10" min="1" - label="Minimum number of seeds to search for during aminoacid alignment." - help="Relevant for short sequences. In long sequences, the number of seeds is determined by the aminoacid seed spacing." /> - <param argument="--aa-seed-spacing" type="integer" value="100" min="0" - label="Spacing between seeds during aminoacid alignment." /> - <param argument="--aa-mismatches-allowed" type="integer" value="2" min="0" - label="Maximum number of mismatching aminoacids." - help="Maximum number of mismatching aminoacids allowed for a seed to be considered a match." /> </inputs> <outputs> <data name="output_fasta" format="fasta" label="${tool.name} on ${on_string} (FASTA)"/> |