Previous changeset 12:14e7c35f3d00 (2023-01-25) Next changeset 14:59fd173ac850 (2023-05-26) |
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit b7df28a308484a4af1d33e0ddc2c4e391643ec1e |
modified:
macros.xml pyGenomeTracks.xml test-data/bigwig_multiple.png test-data/test2.ini |
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diff -r 14e7c35f3d00 -r 360df4999907 macros.xml --- a/macros.xml Wed Jan 25 15:33:12 2023 +0000 +++ b/macros.xml Tue Mar 28 10:48:50 2023 +0000 |
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@@ -1,6 +1,6 @@ <macros> <token name="@TOOL_VERSION@">3.8</token> - <token name="@VERSION_SUFFIX@">0</token> + <token name="@VERSION_SUFFIX@">1</token> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">pygenometracks</requirement> |
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diff -r 14e7c35f3d00 -r 360df4999907 pyGenomeTracks.xml --- a/pyGenomeTracks.xml Wed Jan 25 15:33:12 2023 +0000 +++ b/pyGenomeTracks.xml Tue Mar 28 10:48:50 2023 +0000 |
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@@ -426,8 +426,7 @@ grid = $track.track_file_style_conditional.grid nans_to_zeros = $track.track_file_style_conditional.nans_to_zeros use_middle = $track.track_file_style_conditional.use_middle - #set $columns = len(open(str($track.track_file_style_conditional.track_input_bedgraph)).readline().split('\t')) - #if $columns > 4: + #if int(data_bedgraph.metadata.columns) > 4: file_type = bedgraph_matrix type = lines #else: @@ -1513,6 +1512,18 @@ </repeat> <repeat name="tracks"> <conditional name="track_file_style_conditional"> + <param name="track_file_style_selector" value="bedgraph_track_option" /> + <param name="track_input_bedgraph" value="bedgraph_chrx_2e6_5e6.bg,bedgraph2_X_2.5e6_3.5e6.bdg,tad_score.gz" /> + <param name="title" value="rep bed" /> + <param name="show_data" value="true" /> + <conditional name="type_conditional"> + <param name="type_selector" value="point_option" /> + <param name="width_point" value="2" /> + </conditional> + </conditional> + </repeat> + <repeat name="tracks"> + <conditional name="track_file_style_conditional"> <param name="track_file_style_selector" value="bigwig_track_option" /> <param name="track_input_bigwig" value="bigwig_chrx_2e6_5e6.bw,bigwig_chrx_2e6_5e6.bw" ftype="bigwig" /> <param name="title" value="rep 1 test line" /> |
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diff -r 14e7c35f3d00 -r 360df4999907 test-data/bigwig_multiple.png |
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Binary file test-data/bigwig_multiple.png has changed |
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diff -r 14e7c35f3d00 -r 360df4999907 test-data/test2.ini --- a/test-data/test2.ini Wed Jan 25 15:33:12 2023 +0000 +++ b/test-data/test2.ini Tue Mar 28 10:48:50 2023 +0000 |
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@@ -1,5 +1,24 @@ [x-axis] where = top +[bedgraph_1] +file = test-data/bedgraph_chrx_2e6_5e6.bg +title = rep bed +type = points:2.0 +height = 1.5 +color = black +[bedgraph_1] +file = test-data/bedgraph2_X_2.5e6_3.5e6.bdg +title = rep bed +type = points:2.0 +height = 1.5 +color = black +[bedgraph_1] +file = test-data/tad_score.gz +title = rep bed +file_type = bedgraph_matrix +type = lines +height = 1.5 +color = black [bigwig_1] file = test-data/bigwig_chrx_2e6_5e6.bw title = rep 1 test line |