| Previous changeset 5:eca03db4f612 (2020-01-08) Next changeset 7:326a3db8d9d1 (2020-04-17) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d5b42c5571c64be9fcfe515e79210cbf4c75beaf" |
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modified:
pyGenomeTracks.xml |
| b |
| diff -r eca03db4f612 -r 5cec5fb749f0 pyGenomeTracks.xml --- a/pyGenomeTracks.xml Wed Jan 08 09:15:19 2020 -0500 +++ b/pyGenomeTracks.xml Tue Feb 11 10:20:24 2020 -0500 |
| b |
| b'@@ -67,10 +67,10 @@\n #if $track.track_file_style_conditional.colormap:\n colormap = $track.track_file_style_conditional.colormap\n #end if\n- #if $track.track_file_style_conditional.min_value:\n+ #if $track.track_file_style_conditional.min_value != "":\n min_value = $track.track_file_style_conditional.min_value\n #end if\n- #if $track.track_file_style_conditional.max_value:\n+ #if $track.track_file_style_conditional.max_value != "":\n max_value = $track.track_file_style_conditional.max_value\n #end if\n transform = $track.track_file_style_conditional.transform\n@@ -212,10 +212,10 @@\n #if $track.track_file_style_conditional.height:\n height = $track.track_file_style_conditional.height\n #end if\n- #if $track.track_file_style_conditional.min_value:\n+ #if $track.track_file_style_conditional.min_value != "":\n min_value = $track.track_file_style_conditional.min_value\n #end if\n- #if $track.track_file_style_conditional.max_value:\n+ #if $track.track_file_style_conditional.max_value != "":\n max_value = $track.track_file_style_conditional.max_value\n #end if\n color = $track.track_file_style_conditional.color_link.color\n@@ -253,10 +253,10 @@\n #if $track.track_file_style_conditional.display.width_adjust:\n width_adjust = $track.track_file_style_conditional.display.width_adjust\n #end if\n- #if $track.track_file_style_conditional.display.min_value:\n+ #if $track.track_file_style_conditional.display.min_value != "":\n min_value = $track.track_file_style_conditional.display.min_value\n #end if\n- #if $track.track_file_style_conditional.display.max_value:\n+ #if $track.track_file_style_conditional.display.max_value != "":\n max_value = $track.track_file_style_conditional.display.max_value\n #end if\n #end if\n@@ -300,10 +300,10 @@\n #if $track.track_file_style_conditional.height_bedgraph:\n height = $track.track_file_style_conditional.height_bedgraph\n #end if\n- #if $track.track_file_style_conditional.min_value:\n+ #if $track.track_file_style_conditional.min_value != "":\n min_value = $track.track_file_style_conditional.min_value\n #end if\n- #if $track.track_file_style_conditional.max_value:\n+ #if $track.track_file_style_conditional.max_value != "":\n max_value = $track.track_file_style_conditional.max_value\n #end if\n show_data_range = $track.track_file_style_conditional.show_data\n@@ -352,10 +352,10 @@\n #if $track.track_file_style_conditional.color_negative.color_negative_select == "true":\n negative_color = $track.track_file_style_conditional.color_negative.color\n #end if\n- #if $track.track_file_style_conditional.min_value:\n+ #if $track.track_file_style_conditional.min_value != "":\n min_value = $track.track_file_style_conditional.min_value\n #end if\n- #if $track.track_file_style_conditional.max_value:\n+ #if $track.track_file_style_conditional.max_value != "":\n max_value = $track.track_file_style_conditional.max_value\n #end if\n height = $track.track_file_style_conditional.height_bigwig\n@@ -398,10 +398,10 @@\n #if $track.track_file_style_conditional.height_bedgraph:\n height = $track.track_file_style_conditional.height_bedgraph\n #end if\n- #if $track.track_file_style_conditional.min_value:\n+ #if $track.track_file_style_conditional.min_value != "":\n min_value = $track.track_file_style_conditional.min_value\n #end if\n- #if $track.track_file_style_conditional.max_value:\n+ #if $track.track_file_style_conditional.max_value != "":\n max_value = $track.track_file_style_conditional.max_value\n #end if\n #if $track.track_file_style_conditional.type_lines:\n@@ -438,10 +438,10 @@\n #if $track.track_file_style_conditional.height:\n height = $track.track_file_style_conditional.height\n #end if\n- #if $track.track_file_style_conditional.min_value:\n+ #if $track.track_file_style_conditional.min_value != "":\n min_value = $'..b'_value\n #end if\n y_values = $track.track_file_style_conditional.y_values\n@@ -519,7 +519,7 @@\n <param name="height_matrix" type="float" value="" optional="True" label="height"/>\n <param name="show_masked_bins" type="boolean" truevalue="true" falsevalue="false" checked="false"\n label="Show masked bins" />\n- <param name="boundaries_file" type="data" optional="True" format="bed" label="Boundaries file" multiple="True"/> \n+ <param name="boundaries_file" type="data" optional="True" format="bed" label="Boundaries file" multiple="True"/>\n <param name="scale_factor" type="float" value="1.0" optional="True" label="Scale factor" help="if the values in the matrix need to be scaled the following parameter can be used" />\n <param name="rasterize" type="boolean" truevalue="true" falsevalue="false" checked="true"\n label="Rasterize the heatmap" />\n@@ -554,7 +554,7 @@\n <option value="triangles">triangles (plot triangles between start and end)</option>\n </param>\n <param name="arrowhead_included" type="boolean" truevalue="true" falsevalue="false" checked="false"\n- label="Include the arrowhead in the bed interval:" \n+ label="Include the arrowhead in the bed interval:"\n help="When set to False, the arrow indicating the orientation of the interval is plotted outside of the interval."/>\n <param name="fontsize" type="integer" value="" optional="True" label="Fontsize" />\n <expand macro="bed_advanced_macro" />\n@@ -572,13 +572,13 @@\n <option value="arcs" selected="True">arcs (a line between the centers of the 2 regions)</option>\n <option value="triangles">triangles</option>\n <option value="loops">loops (a rectangle highlighting the intersection)</option>\n- </param> \n+ </param>\n <param name="height" type="float" value="1.5" optional="True" label="height"/>\n <expand macro="minmax_macro" />\n <expand macro="overlay_macro" />\n <expand macro="inverted_macro" />\n <expand macro="spacer_macro" />\n- </when> \n+ </when>\n <when value="narrow_peak_track_option">\n <expand macro="plot_title" />\n <expand macro="track_input_narrow_peak_macro" />\n@@ -594,7 +594,7 @@\n optional="True" label="Use summit information to make the curve." />\n <param name="show_data" type="boolean" truevalue="true" falsevalue="false" checked="false"\n label="Show visualization of data range" />\n- <param name="width_adjust" type="float" value="1.5" optional="True" \n+ <param name="width_adjust" type="float" value="1.5" optional="True"\n label="Factor to change the width of the curve."/>\n <expand macro="minmax_macro" />\n </when>\n@@ -680,7 +680,7 @@\n <param name="show_data" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Show visualization of data range"/>\n <expand macro="inverted_macro" />\n <expand macro="overlay_macro" />\n- <expand macro="spacer_macro" /> \n+ <expand macro="spacer_macro" />\n </when>\n <when value="spacer_option">\n <param name="spacer_height" type="float" value="" optional="True"\n' |