| Variant annotation and effect prediction tools. It annotates and predicts the effects of variants on genes. There are data managers for the Galaxy admin to download genome databases. |
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/snpsift
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| Annotate with variant type | 4.3+t.galaxy0 | 16.01 | |
| SNPs from dbSnp | 4.3+t.galaxy0 | 16.01 | |
| basic checks for VCF specification compliance | 4.3+t.galaxy0 | 16.01 | |
| remove INFO field annotations | 4.3+t.galaxy0 | 16.01 | |
| Filter variants using intervals | 4.3+t.galaxy0 | 16.01 | |
| Filter variants using arbitrary expressions | 4.3+t.galaxy0 | 16.01 | |
| Count samples are in 'case' and 'control' groups. | 4.3+t.galaxy0 | 16.01 | |
| from a VCF file into a tabular file | 4.3+t.galaxy0 | 16.01 | |