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Repository data_manager_humann2_database_downloader
Name: data_manager_humann2_database_downloader
Owner: iuc
Synopsis: HUMAnN2 for functionally profiling metagenomes and metatranscriptomes at species-level resolution
HUMAnN is a pipeline for efficiently and accurately profiling the presence/absence and abundance of microbial pathways 
in a community from metagenomic or metatranscriptomic sequencing data (typically millions of short DNA/RNA reads). 
This process, referred to as functional profiling, aims to describe the metabolic potential of a microbial community 
and its members. More generally, functional profiling answers the question "What are the microbes in my community-of-interest 
doing (or capable of doing)?"
Content homepage: http://huttenhower.sph.harvard.edu/humann2
Development repository: https://github.com/ASaiM/galaxytools/tree/master/data_managers/data_manager_humann2_database_downloader
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_humann2_database_downloader/1316375a8cbb
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/data_manager_humann2_database_downloader
Type: unrestricted
Revision: 1:1316375a8cbb
This revision can be installed: True
Times cloned / installed: 2015

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Download HUMAnN2 database 0.9.9 any

Data Managers
Name Version Data Tables
data_manager_humann2_download 0.0.1 humann2_nucleotide_database, humann2_protein_database

Categories
Data Managers - Utilities for Managing Galaxy's built-in data cache