Repository revision
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository spades
Name: spades
Owner: nml
Synopsis: Genome assembler for genomes of regular and single-cell projects.
SPAdes is a genome assembly algorithm which was designed for single cell and multi-cells bacterial data sets. Therefore, it might not be suitable for large genomes projects. SPAdes works with Ion Torrent, PacBio, Oxford Nanopore, and Illumina paired-end, mate-pairs and single reads.
Content homepage: https://github.com/ablab/spades
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/spades
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/nml/spades/35cb17bd8bf9
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/nml/spades
Type: unrestricted
Revision: 4:35cb17bd8bf9
This revision can be installed: True
Times cloned / installed: 3913
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_spades_3_9_0 revision d8c8c3dc8f9a owned by nml

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
spades 3.9.0 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
SPAdes genome assembler for regular and single-cell projects 1.4 any

Categories
Assembly - Tools for working with assemblies