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Repository mirdeep2_quantifier
Name: mirdeep2_quantifier
Owner: rnateam
Synopsis: MiRDeep2 is a software package for identification of novel and known miRNAs in deep sequencing data.
MiRDeep2 is a software package for identification of novel and known miRNAs in deep sequencing data. Furthermore, it can be used for miRNA expression profiling across samples.
Content homepage: https://www.mdc-berlin.de/8551903/en/
Development repository: https://github.com/bgruening/galaxytools/tree/master/tools/mirdeep2/mirdeep2_quantifier
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/rnateam/mirdeep2_quantifier/40dc77f3730c
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/rnateam/mirdeep2_quantifier
Type: unrestricted
Revision: 1:40dc77f3730c
This revision can be installed: True
Times cloned / installed: 1156
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_gnu_coreutils_8_25 revision a177f177d42f owned by iuc (prior install required)
Repository package_perl_5_18 revision 35f117d7396b owned by iuc (prior install required)
Repository package_perl_5_18 revision 35f117d7396b owned by iuc (prior install required)
Repository package_bowtie_0_12_7 revision 9f9f38617a98 owned by devteam

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
bowtie 0.12.7 package
mirdeep2_quantifier 2.0 package
pdf_api2 2.023 package
perl 5.18.1 package
vienna_rna 1.8.5 package

Contents of this repository

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Name Description Version Minimum Galaxy Version
fast quantitation of reads mapping to known miRBase precursors 2.0.0 any

Categories
RNA - Utilities for RNA