Repository revision
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Repository bwa
Name: bwa
Owner: devteam
Synopsis: Wrapper for bwa mem, aln, sampe, and samse
A collection of Galaxy bwa wrappers based on version 0.7.17.
Content homepage: http://bio-bwa.sourceforge.net/
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/bwa
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/devteam/bwa/546ada4a9f43
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/bwa
Type: unrestricted
Revision: 11:546ada4a9f43
This revision can be installed: True
Times cloned / installed: 22738
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_ncurses_5_9 revision 335ebf512407 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_bwa_0_7_12 revision 6af9b24ddeee owned by iuc

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
bwa 0.7.12 package
samtools 1.2 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
- map medium and long reads (> 100 bp) against reference genome 0.7.12.1 16.01
- map short reads (< 100 bp) against reference genome 0.7.12.1 16.01

Categories
Next Gen Mappers - Tools for the analysis and handling of Next Gen sequencing data