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Repository positions2snv_invariant_alignment
Name: positions2snv_invariant_alignment
Owner: nml
Synopsis: Generate alignment of SNVs and non-variant positions from SNVPhyl variant table.
The SNVPhyl (Single Nucleotide Variant PHYLogenomics) pipeline is a pipeline for identifying Single Nucleotide Variants (SNV) within a collection of microbial genomes and constructing a phylogenetic tree.
Content homepage: https://snvphyl.readthedocs.io/en/latest/
Development repository: https://github.com/phac-nml/snvphyl-galaxy
Link to this repository: https://toolshed.g2.bx.psu.edu/view/nml/positions2snv_invariant_alignment/5dc704146cc6
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/nml/positions2snv_invariant_alignment
Type: unrestricted
Revision: 1:5dc704146cc6
This revision can be installed: True
Times cloned / installed: 334

Contents of this repository

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Name Description Version Minimum Galaxy Version
Create a SNV and non-variant alignment from the SNVPhyl positions table and a reference genome. 1.8.2+galaxy1 16.01

Categories
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA