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Repository microsatellite_ngs
Name: microsatellite_ngs
Owner: arkarachai-fungtammasan
Synopsis: Pipeline to profile and genotype microsatellites from short read data
This repository contains three sets of tools: 1 create microsatellite length profile, 2 correct for sequencing errors and report genotype, 3 estimate minimum sequencing read depth, 4 convert informative read depth to locus specific/genome wide sequencing depth.
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/arkarachai-fungtammasan/microsatellite_ngs/7cc220e8c2ac
Type: unrestricted
Revision: 3:7cc220e8c2ac
This revision can be installed: True
Times cloned / installed: 71

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
during sequencing and library prep 2.0.0 any
from SAM file sorted by readname 1.0.0 any
for flank-based mapping of microsatellites 1.0.0 any
from the same allele combination 2.0.0 any
for short read, reference, and mapped data 1.0.0 any
2.0.0 any
of a specific column 1.0.0 any
of microsatellites and output as two fastq files in forward-forward orientation 1.0.0 any
--change space to underscore of a specific column 1.0.0 any
of the consecutive allele from given error profile 2.0.0 any
1.0.0 any

Categories
Next Gen Mappers - Tools for the analysis and handling of Next Gen sequencing data
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA