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Repository hicexplorer_hicdetectloops

Name: hicexplorer_hicdetectloops

Owner: bgruening

Synopsis: Wrapper for HiCExplorer: hicDetectLoops

Detailed description:

Sequencing techniques that probe the 3D organization of the genome generate large amounts of
data whose processing, analysis and visualization is challenging. Here, we present Hi-C Explorer,
a set of tools for the analysis and visualization of chromosome conformation data. Hi-C explorer
facilitates the creation of contact matrices, correction of contacts, TAD detection, merging,
reordering or chromosomes, conversion from different formats and detection of long-range contacts.
Moreover, it allows the visualization of multiple contact matrices along with other types of data
like genes, compartments, ChIP-seq coverage tracks (and in general any type of genomic scores) and long range contacts.

doi: 10.5281/zenodo.159780

Repository-Maintainer: Björn Grüning

https://github.com/deeptools/HiCExplorer

Content homepage: https://github.com/deeptools/HiCExplorer

Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer

Link to this repository: https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicdetectloops/bf9379529c3e

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicdetectloops

Type: unrestricted

Revision: 10:bf9379529c3e

This revision can be installed: True

Times cloned / installed: 531