khmer is a library and suite of command line tools for working with DNA sequence. It is primarily aimed at short-read sequencing data such as that produced by the Illumina platform. khmer takes a k-mer-centric approach to sequence analysis, hence the name. The official repository is at https://github.com/ged-lab/khmer and you can read the docs online here: http://khmer.readthedocs.org/ There are two mailing lists dedicated to khmer, an announcements-only list and a discussion list. To search their archives and sign-up for them, please visit the following URLs: Discussion http://lists.idyll.org/listinfo/khmer Announcements http://lists.idyll.org/listinfo/khmer-announce |
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/package_khmer_2_0
Repository package_bz2file_0_98 revision 73382c8fa8f3 owned by iuc (prior install required) |
Repository package_bz2file_0_98 revision 73382c8fa8f3 owned by iuc |
Repository package_setuptools_19_0 revision cb689698d484 owned by iuc (prior install required) |
Name | Version | Type | |
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bz2file | 0.98 | package | |
khmer | 2.0 | package | |
screed | 0.9 | package | |
setuptools | 19.0 | package |