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Repository blast_to_scaffold
Name: blast_to_scaffold
Owner: drosofff
Synopsis: Generate DNA scaffold from blastn or tblastx alignments of Contigs
This tool start from DNA contigs that aligned to a subject DNA sequence through blastn or tblastx.
The contigs must be provided in fasta format. The blastn or tblastx output must be tabular, the 12 standard column plus column 13 with the length of the blastn or tblastx subject.
The sequence used to BLAST (blastn or tblastx) the contigs must be provided to serve as a guide to the final assembly
The final assembly is a DNA sequence.
Nucleotides of the guide sequence which were not covered by contigs are in small letters in the output assembly.
Content homepage: http://artbio.fr
Development repository: https://github.com/ARTbio/tools-artbio/tree/master/tools/blast_to_scaffold
Link to this repository: https://toolshed.g2.bx.psu.edu/view/drosofff/blast_to_scaffold/81ffa74cf96e
Type: unrestricted
Revision: 5:81ffa74cf96e
This revision can be installed: True
Times cloned / installed: 506

Contents of this repository

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Name Description Version Minimum Galaxy Version
Generate DNA scaffold from blastn or tblastx alignment of Contigs 0.9.0 any

Categories
RNA - Utilities for RNA
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
Assembly - Tools for working with assemblies