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Repository package_khmer_2_0

Name: package_khmer_2_0

Owner: crusoe

Synopsis: In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

Detailed description:

Deprecated; use the IUC maintained version instead: https://toolshed.g2.bx.psu.edu/view/iuc/suite_khmer/cedc2ec71571

khmer is a library and suite of command line tools for working with DNA
sequence. It is primarily aimed at short-read sequencing data such as that
produced by the Illumina platform. khmer takes a k-mer-centric approach to
sequence analysis, hence the name.

The official repository is at https://github.com/ged-lab/khmer
and you can read the docs online here: http://khmer.readthedocs.org/

There are two mailing lists dedicated to khmer, an announcements-only list
and a discussion list. To search their archives and sign-up for them, please
visit the following URLs:

Discussion http://lists.idyll.org/listinfo/khmer
Announcements http://lists.idyll.org/listinfo/khmer-announce

Content homepage: https://khmer.readthedocs.org/

Development repository: https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/

Link to this repository: https://toolshed.g2.bx.psu.edu/view/crusoe/package_khmer_2_0/c7702a7d26e8

Type: tool_dependency_definition

Revision: 0:c7702a7d26e8

This revision can be installed: True

Times cloned / installed: 9